denglab SeqSero2 issues

denglab / SeqSero2

SeqSero2

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issues

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Allele workflow issue: correct identification of antigen but erroneous prediction of serotype

#53 GuilhemRoyer opened 5 days ago
0
serovar prediction does not match antigenetic profile

#52 alexandreflageul opened 6 months ago
1
seqtk absent of requirement list

#51 nsmro opened 8 months ago
0
Seroseq2 not usable if path includes whitespaces

#50 nsmro opened 8 months ago
0
输入的文件格式内容到底是什么样的呢？

#49 llity opened 10 months ago
0
SeqSero2 "freezes" on particular sample

#48 eam12 opened 11 months ago
10
No serotype antigens were detected. This is an atypical result that should be further investigated.

#47 gagi19993 opened 1 year ago
0
Outcome of O2/O9 comparison can be random

#46 VanOverbeeke opened 2 years ago
5
Reporting inter-serotype contamination in a sample (bug?)

#45 AleSR13 opened 2 years ago
2
antigenic profile

#44 Chris091089 closed 2 years ago
1
SeqSero2 1.2.1 crashes on some readsets

#43 evolarjun opened 2 years ago
0
Error

#42 ManuelaMCG opened 2 years ago
0
Add --phred_offset param to fix bug on some FASTQ

#41 evolarjun closed 3 years ago
0
Summarize SeqSero Results

#40 ayoraind opened 3 years ago
0
question "assembly track"

#39 evezeyl opened 3 years ago
0
V1.2.1 beta

#38 LSTUGA closed 3 years ago
0
Subspecies determination

#37 VT-20 opened 3 years ago
2
Why is half of my data (paired-end fastq) not used?

#36 klamens closed 3 years ago
0
Conda package dependencies

#35 mweberr opened 3 years ago
2
No such file or directory

#34 Chris091089 closed 3 years ago
2
bioconda installing SeqSero2 has python version issues

#33 evolarjun closed 3 years ago
1
Fails to find antigens.pickle (seqsero2 installed through Conda) and recognizing output path

#32 AleSR13 closed 3 years ago
4
V1.1.0 beta

#31 LSTUGA closed 4 years ago
0
Serotype Seftenberg Allele Mode

#30 whottel closed 3 years ago
1
V1.1.0 beta

#29 LSTUGA closed 4 years ago
0
Updatedb and troubleshooting

#28 ShaokangZhang opened 4 years ago
0
subspecies determination errors

#27 retimme closed 3 years ago
1
Consistent tabular/TSV output

#26 crashfrog closed 3 years ago
1
Specify sample name with optional '-n' parameter

#25 crashfrog closed 3 years ago
0
SeqSero2 1.0.2 fails on salmonella with O antigen 13

#24 crashfrog opened 4 years ago
0
Inconsistant result file format

#23 duceppemo closed 3 years ago
0
Paths to source files removed from arguments to BWA commands

#22 CornTimer closed 3 years ago
0
BWA actions in SeqSero2_package.py reference incorrect path

#21 CornTimer closed 3 years ago
0
Updatedb and troubleshooting

#20 ShaokangZhang closed 4 years ago
0
Updatedb and troubleshooting

#19 ShaokangZhang closed 4 years ago
0
seqsero2 updates db

#18 ShaokangZhang closed 4 years ago
0
Seqsero shaoting bioconda

#17 ShaokangZhang closed 4 years ago
0
Biopython and its version not listed in dependencies

#16 kapsakcj closed 4 years ago
2
O:9 interpretation

#15 ATML-TD closed 3 years ago
1
tiny bug: output of k-mer mode only lists first of R1 and R2 files as input files

#14 kapsakcj closed 3 years ago
2
judge_subspecies split error

#13 itsmeludo closed 5 years ago
3
Inconsistent naming in output files

#12 tseemann closed 3 years ago
1
Is "SalmID" needed for all modes?

#11 tseemann closed 3 years ago
1
UnboundLocalError: local variable 'O_choice' referenced before assignment

#10 tseemann closed 3 years ago
0
Add --check option to ensure all dependencies are installed

#9 tseemann closed 3 years ago
0
BUG: ln: failed to create symbolic link (if folder exists)

#8 tseemann closed 3 years ago
1
USAGE in README does not reflect default mode in v1.0.0 release

#7 kapsakcj closed 3 years ago
2
Documentation doesn't give version numbers for dependencies

#6 crashfrog closed 3 years ago
1
Algorithm Description

#5 alantsangmb opened 5 years ago
0
Fix the error of not reading the "antigens.pickle" file

#4 chen1i6c04 closed 6 years ago
0