dib-lab farm-notes issues

dib-lab / farm-notes

notes on the farm cluster

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Managing home directories and project space on farm's disks

#72 ctb opened 1 month ago
1
Farm status webpage link and subscription for updates

#71 ccbaumler opened 2 months ago
0
putting conda environments outside your home directory

#70 ctb opened 2 months ago
3
[MRG] Add Markdown for getting files from cloud services

#69 ccbaumler opened 6 months ago
0
attaching to a node running a job in order to inspect processes, e.g. `top`

#68 ctb opened 7 months ago
0
See your farm account associations

#67 ccbaumler opened 1 year ago
0
additional guide and steps to make installing conda more accessible for beginner

#66 yuenchingshen opened 1 year ago
2
useful disk usage commands

#65 ctb opened 1 year ago
4
MRG: fix two minor typos in github update

#64 ctb closed 1 year ago
0
[MRG] added ssh key to github doc

#63 ccbaumler closed 1 year ago
1
how to debug ssh login issues on farm

#62 ctb opened 1 year ago
0
MRG: update getting started with hippo instructions & mambaforge

#61 ctb closed 1 year ago
3
update farm account request information

#60 bluegenes closed 1 year ago
1
Using Singularity and Nextflow in the Farm

#59 ccbaumler opened 1 year ago
1
A basic intro to HPC and the Farm Cluster

#58 ccbaumler opened 1 year ago
0
Make your terminal colorful

#57 hehouts opened 1 year ago
0
remote ssh access to on-campus desktop computers

#56 ctb opened 1 year ago
0
Binder quick-start

#55 hehouts opened 1 year ago
1
how farm queue priorities work

#54 ctb opened 1 year ago
0
use seqtk to extract subsequences from FASTA files

#53 ctb opened 1 year ago
0
Update advanced-usage.md

#52 shokrof opened 2 years ago
0
running jupyter notebooks on farm

#51 ctb opened 2 years ago
5
automating and running things in parallel on farm

#50 ctb opened 2 years ago
0
hosting mkdocs sites on farm

#49 ctb opened 2 years ago
0
setting up authentication for static files on farm

#48 ctb opened 2 years ago
0
Ross-Ibarra lab docs

#47 ctb opened 2 years ago
0
installing python projects from git/github using `pip`

#46 ctb opened 2 years ago
2
some snakemake principles -

#45 ctb opened 2 years ago
3
running RStudio Server on farm using R as installed in a conda environment

#44 ctb opened 2 years ago
15
serving files from farm via https

#43 ctb opened 2 years ago
6
some mamba stuff - minimamba, and `MAMBA_ROOT_PREFIX`

#42 ctb opened 2 years ago
0
Farm resources we have access to

#41 SichongP opened 2 years ago
0
cloning repos from github to your farm account with your github access credentials

#40 ctb opened 2 years ago
0
commands to examine ctbrowngrp queue

#39 ctb opened 2 years ago
0
Update magic-commands.md

#38 raynamharris closed 2 years ago
1
Update example-scripts.md

#37 raynamharris closed 2 years ago
0
bml and bmm time limits

#36 ctb opened 2 years ago
0
update docs to make clear backups are not available

#35 ctb opened 2 years ago
0
lessons from charcoal - running big snakemake on farm

#34 ctb opened 2 years ago
0
[MRG] adding snakemake `--profile`

#33 mr-eyes opened 2 years ago
9
snakemake `--cluster-config` is deprecated.

#32 mr-eyes opened 2 years ago
1
[MRG] fix the srun command so that it uses the correct queue

#31 ctb closed 2 years ago
0
Managing scratch data [Discussion]

#30 mr-eyes opened 2 years ago
12
Managing system modules

#29 mr-eyes closed 2 years ago
0
Update new help desk email

#28 SichongP closed 2 years ago
0
Update on how to better detect edge cases

#27 SichongP closed 2 years ago
0
Add code formatting to /group/ctbrowngrp/

#26 olgabot closed 3 years ago
1
ssh tunneling instructions

#25 ctb opened 3 years ago
5
command to get directory sizes for the current directory you are in

#24 taylorreiter opened 3 years ago
1
instructions for transferring or downloading files from farm

#23 ctb opened 3 years ago
0