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dieterich-lab
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circtools
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
http://circ.tools
GNU General Public License v3.0
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BED file produced by exon usage script misses chromosome column
#45
tjakobi
closed
6 years ago
0
Check the processing of single exon genes in terms of circRNA RBP enrichment
#44
tjakobi
closed
6 years ago
1
Add a visualization for top enriched circRNAs/RBPs
#43
tjakobi
closed
6 years ago
1
Investigate what 'unknown breakpoint' events are
#42
tjakobi
opened
6 years ago
1
Normalize #circRNA isoforms in visualization plots
#41
tjakobi
opened
6 years ago
0
CircSkipping visualization
#40
tjakobi
closed
6 years ago
1
Quantile plot for reconstruction module
#39
tjakobi
closed
6 years ago
0
Include option to generate black and white or grey scale graphs for non-color journals
#38
tjakobi
closed
6 years ago
0
R dev
#37
alexey0308
closed
7 years ago
0
Module to analyse conservation of circRNAs across species
#36
tjakobi
opened
7 years ago
0
R dev
#35
alexey0308
closed
7 years ago
0
Correct handling of the number of iterations
#34
tjakobi
closed
7 years ago
2
Length calculation when used in feature mode
#33
tjakobi
closed
7 years ago
1
X labels of the PDF output are alphabetically ordered
#32
tjakobi
closed
7 years ago
0
Add a DCC analysis script able to uncover library problems
#31
tjakobi
closed
7 years ago
1
Enrichment module produces external bedtools error when using -I *_utr
#30
tjakobi
closed
7 years ago
4
fix #28
#29
alexey0308
closed
7 years ago
0
primer design R installation script stuck in loop
#28
tjakobi
closed
7 years ago
4
Add option to include / exclude specific genomic features during shuffeling
#27
tjakobi
closed
6 years ago
3
Visualization option for enrichment module
#26
tjakobi
closed
6 years ago
1
Provide a sample data set
#25
tjakobi
closed
5 years ago
4
Module to design siRNAs
#24
tjakobi
opened
7 years ago
5
readme for the package
#23
alexey0308
closed
7 years ago
0
R dev
#22
alexey0308
closed
7 years ago
0
Installation instructions for OligoArrayAux software
#21
tjakobi
closed
7 years ago
1
Installation instructions / link for bedtools
#20
tjakobi
closed
7 years ago
0
R install script fails on fresh R 3.4.0 install
#19
tjakobi
closed
7 years ago
4
r main script ready
#18
alexey0308
closed
7 years ago
2
error in DECIPHER call to RSQLite
#17
alexey0308
closed
6 years ago
3
Remove (py)bedtools dependency
#16
tjakobi
opened
7 years ago
0
Add support for zipped input files
#15
tjakobi
opened
7 years ago
0
Add a possibility to use custom output file names
#14
tjakobi
closed
7 years ago
0
R dev: add transformation and fix primer design
#13
alexey0308
closed
7 years ago
0
primer design
#12
alexey0308
closed
7 years ago
0
Implement a primer visualization and design wrapper R script
#11
tjakobi
closed
7 years ago
1
How do we optimally integrate DCC and FUCHS?
#10
tjakobi
closed
7 years ago
1
Integration of FUCHS
#9
tjakobi
closed
7 years ago
1
Integration of DCC
#8
tjakobi
closed
7 years ago
1
Add framework for R installation to setup script
#7
tjakobi
closed
7 years ago
2
Integration of the alternative exon usage script
#6
tjakobi
closed
6 years ago
3
Integration of CircTest
#5
tjakobi
closed
7 years ago
2
Establish a stable version of the circtools platform
#4
tjakobi
closed
7 years ago
1
Adding unit tests to existing code base
#3
tjakobi
opened
7 years ago
0
Finish implementation of permutation testing
#2
tjakobi
closed
7 years ago
0
package documentation
#1
alexey0308
closed
7 years ago
1
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