ding-lab CharGer issues

ding-lab / CharGer

Characterization of Germline variants

https://ding-lab.github.io/CharGer/

GNU General Public License v3.0

97 stars 37 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Misinformation in README and Python version conflict

#58 altundal19 opened 2 months ago
0
Unable to install charger via pip or conda

#57 abhayr20 opened 1 year ago
0
Default inheritance table and gene list for BP2 and PP1.

#56 yangyxt opened 2 years ago
0
PM5 found 0 pathogenic variants

#55 lihm1 opened 2 years ago
0
Need most updated ClinVar files

#54 TimmPKU opened 3 years ago
0
is this software alive?

#53 thedam opened 3 years ago
0
NameError: global name 'entrezaip' is not defined when doing clinvar search

#52 mingoo426 opened 3 years ago
0
Install error

#51 mingoo426 closed 3 years ago
0
CharGer::runIndelModules Error:

#50 rescuz opened 3 years ago
0
What Cross-reference data files to use and where to get for lung cancer

#49 JiaweiDai-create opened 4 years ago
0
Reference for inheritanceGeneList 20160301_Rahman_KJ_KH_gene_table_CharGer.txt.gz

#48 nah2025 closed 4 years ago
2
error: Hint: is the input amino acid change column correct , charger version 0.5.4

#47 nah2025 closed 4 years ago
1
installed Charger 0.5.4 but version in help is 0.5.3

#46 nah2025 closed 2 years ago
1
Null Variant classified as Benign

#45 NTNguyen13 closed 2 years ago
3
Provide instructions to generate the HotSpot3D cluster file

#44 ccwang002 opened 4 years ago
0
IndexError: list index out of range while running with Mac-Clinvar

#43 NTNguyen13 closed 4 years ago
4
Problems to run CharGer v0.5.4

#42 yubau1112 closed 4 years ago
5
I can not get any output file using v0.6.0b1 version

#41 yubau1112 closed 4 years ago
1
can you give me an example command with run VEP?

#40 yubau1112 closed 4 years ago
4
run demo.sh, report error

#39 xuanzhu1213 closed 4 years ago
2
something wrong

#38 yubau1112 closed 4 years ago
7
All variants classified as Benign or Uncertain Significance

#37 nrosewick closed 4 years ago
4
biomine warning

#36 rescuz closed 4 years ago
3
V0.5.4

#35 fernanda-rodrigues closed 5 years ago
0
V.0.5.3

#34 fernanda-rodrigues closed 5 years ago
0
Even VEP90 branch with master branch

#33 fernanda-rodrigues closed 5 years ago
0
-o output read as input?

#32 laura-budurlean closed 5 years ago
0
Fix HGVSc parsing from VEP annotation

#31 fernanda-rodrigues closed 5 years ago
0
can't input maf.file

#30 rescuz closed 5 years ago
2
I couldn't find demo/runDemo.sh /pathogenicVariants.vcf

#29 rescuz closed 5 years ago
1
getExAC_MAF not behaving like expected

#28 mmoisse closed 5 years ago
0
Fixed mismatch in getRefAltAminoAcids

#27 mmoisse closed 5 years ago
0
PS1 is samePeptideChange

#26 mmoisse closed 5 years ago
0
isConflicted only if path and bening

#25 mmoisse closed 5 years ago
1
re.match is not working like intended

#24 mmoisse closed 5 years ago
2
clinical_significance_ordered is better

#23 mmoisse closed 5 years ago
0
Fix: always Likely benign and Likely pathogenic

#22 mmoisse closed 5 years ago
0
clinvarDone always true

#21 mmoisse closed 5 years ago
1
I used CharGer. But I got different results.

#20 oghzzang closed 5 years ago
2
Fix bug

#19 icebert closed 5 years ago
3
All Uncertain Significance

#18 ekofman closed 5 years ago
1
could not find amino acid change or intronic change

#17 HeXY0515 closed 5 years ago
2
delete truncated .txt.gz file; uploaded correct one

#16 fernanda-rodrigues closed 6 years ago
0
Dependency files used in PanCanAtlas study.

#15 fernanda-rodrigues closed 6 years ago
0
Data used in PanCanAtlas study.

#14 fernanda-rodrigues closed 6 years ago
0
Revert "Deleted unnecessary files; compressed all into one."

#13 fernanda-rodrigues closed 6 years ago
0
Revert "Data used to run CharGer in the PanCanAtlas study."

#12 fernanda-rodrigues closed 6 years ago
0
Data used to run CharGer in the PanCanAtlas study.

#11 fernanda-rodrigues closed 6 years ago
0
Deleted unnecessary files; compressed all into one.

#10 fernanda-rodrigues closed 6 years ago
0
Data used to run CharGer in the PanCanAtlas study.

#9 fernanda-rodrigues closed 6 years ago
0