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ding-lab
/
CharGer
Characterization of Germline variants
https://ding-lab.github.io/CharGer/
GNU General Public License v3.0
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Misinformation in README and Python version conflict
#58
altundal19
opened
1 month ago
0
Unable to install charger via pip or conda
#57
abhayr20
opened
1 year ago
0
Default inheritance table and gene list for BP2 and PP1.
#56
yangyxt
opened
2 years ago
0
PM5 found 0 pathogenic variants
#55
lihm1
opened
2 years ago
0
Need most updated ClinVar files
#54
TimmPKU
opened
3 years ago
0
is this software alive?
#53
thedam
opened
3 years ago
0
NameError: global name 'entrezaip' is not defined when doing clinvar search
#52
mingoo426
opened
3 years ago
0
Install error
#51
mingoo426
closed
3 years ago
0
CharGer::runIndelModules Error:
#50
rescuz
opened
3 years ago
0
What Cross-reference data files to use and where to get for lung cancer
#49
JiaweiDai-create
opened
4 years ago
0
Reference for inheritanceGeneList 20160301_Rahman_KJ_KH_gene_table_CharGer.txt.gz
#48
nah2025
closed
4 years ago
2
error: Hint: is the input amino acid change column correct , charger version 0.5.4
#47
nah2025
closed
4 years ago
1
installed Charger 0.5.4 but version in help is 0.5.3
#46
nah2025
closed
2 years ago
1
Null Variant classified as Benign
#45
NTNguyen13
closed
2 years ago
3
Provide instructions to generate the HotSpot3D cluster file
#44
ccwang002
opened
4 years ago
0
IndexError: list index out of range while running with Mac-Clinvar
#43
NTNguyen13
closed
4 years ago
4
Problems to run CharGer v0.5.4
#42
yubau1112
closed
4 years ago
5
I can not get any output file using v0.6.0b1 version
#41
yubau1112
closed
4 years ago
1
can you give me an example command with run VEP?
#40
yubau1112
closed
4 years ago
4
run demo.sh, report error
#39
xuanzhu1213
closed
4 years ago
2
something wrong
#38
yubau1112
closed
4 years ago
7
All variants classified as Benign or Uncertain Significance
#37
nrosewick
closed
4 years ago
4
biomine warning
#36
rescuz
closed
4 years ago
3
V0.5.4
#35
fernanda-rodrigues
closed
5 years ago
0
V.0.5.3
#34
fernanda-rodrigues
closed
5 years ago
0
Even VEP90 branch with master branch
#33
fernanda-rodrigues
closed
5 years ago
0
-o output read as input?
#32
laura-budurlean
closed
5 years ago
0
Fix HGVSc parsing from VEP annotation
#31
fernanda-rodrigues
closed
5 years ago
0
can't input maf.file
#30
rescuz
closed
5 years ago
2
I couldn't find demo/runDemo.sh /pathogenicVariants.vcf
#29
rescuz
closed
5 years ago
1
getExAC_MAF not behaving like expected
#28
mmoisse
closed
5 years ago
0
Fixed mismatch in getRefAltAminoAcids
#27
mmoisse
closed
5 years ago
0
PS1 is samePeptideChange
#26
mmoisse
closed
5 years ago
0
isConflicted only if path and bening
#25
mmoisse
closed
5 years ago
1
re.match is not working like intended
#24
mmoisse
closed
5 years ago
2
clinical_significance_ordered is better
#23
mmoisse
closed
5 years ago
0
Fix: always Likely benign and Likely pathogenic
#22
mmoisse
closed
5 years ago
0
clinvarDone always true
#21
mmoisse
closed
5 years ago
1
I used CharGer. But I got different results.
#20
oghzzang
closed
5 years ago
2
Fix bug
#19
icebert
closed
5 years ago
3
All Uncertain Significance
#18
ekofman
closed
5 years ago
1
could not find amino acid change or intronic change
#17
HeXY0515
closed
5 years ago
2
delete truncated .txt.gz file; uploaded correct one
#16
fernanda-rodrigues
closed
6 years ago
0
Dependency files used in PanCanAtlas study.
#15
fernanda-rodrigues
closed
6 years ago
0
Data used in PanCanAtlas study.
#14
fernanda-rodrigues
closed
6 years ago
0
Revert "Deleted unnecessary files; compressed all into one."
#13
fernanda-rodrigues
closed
6 years ago
0
Revert "Data used to run CharGer in the PanCanAtlas study."
#12
fernanda-rodrigues
closed
6 years ago
0
Data used to run CharGer in the PanCanAtlas study.
#11
fernanda-rodrigues
closed
6 years ago
0
Deleted unnecessary files; compressed all into one.
#10
fernanda-rodrigues
closed
6 years ago
0
Data used to run CharGer in the PanCanAtlas study.
#9
fernanda-rodrigues
closed
6 years ago
0
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