ding-lab CharGer issues

ding-lab / CharGer

Characterization of Germline variants

https://ding-lab.github.io/CharGer/

GNU General Public License v3.0

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issues

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Misinformation in README and Python version conflict

#58 altundal19 opened 2 months ago
0
Unable to install charger via pip or conda

#57 abhayr20 opened 1 year ago
0
Default inheritance table and gene list for BP2 and PP1.

#56 yangyxt opened 2 years ago
0
PM5 found 0 pathogenic variants

#55 lihm1 opened 2 years ago
0
Need most updated ClinVar files

#54 TimmPKU opened 3 years ago
0
is this software alive?

#53 thedam opened 3 years ago
0
NameError: global name 'entrezaip' is not defined when doing clinvar search

#52 mingoo426 opened 3 years ago
0
Install error

#51 mingoo426 closed 3 years ago
0
CharGer::runIndelModules Error:

#50 rescuz opened 4 years ago
0
What Cross-reference data files to use and where to get for lung cancer

#49 JiaweiDai-create opened 4 years ago
0
Reference for inheritanceGeneList 20160301_Rahman_KJ_KH_gene_table_CharGer.txt.gz

#48 nah2025 closed 4 years ago
2
error: Hint: is the input amino acid change column correct , charger version 0.5.4

#47 nah2025 closed 4 years ago
1
installed Charger 0.5.4 but version in help is 0.5.3

#46 nah2025 closed 2 years ago
1
Null Variant classified as Benign

#45 NTNguyen13 closed 2 years ago
3
Provide instructions to generate the HotSpot3D cluster file

#44 ccwang002 opened 4 years ago
0
IndexError: list index out of range while running with Mac-Clinvar

#43 NTNguyen13 closed 4 years ago
4
Problems to run CharGer v0.5.4

#42 yubau1112 closed 4 years ago
5
I can not get any output file using v0.6.0b1 version

#41 yubau1112 closed 4 years ago
1
can you give me an example command with run VEP?

#40 yubau1112 closed 4 years ago
4
run demo.sh, report error

#39 xuanzhu1213 closed 4 years ago
2
something wrong

#38 yubau1112 closed 4 years ago
7
All variants classified as Benign or Uncertain Significance

#37 nrosewick closed 4 years ago
4
biomine warning

#36 rescuz closed 4 years ago
3
V0.5.4

#35 fernanda-rodrigues closed 5 years ago
0
V.0.5.3

#34 fernanda-rodrigues closed 5 years ago
0
Even VEP90 branch with master branch

#33 fernanda-rodrigues closed 5 years ago
0
-o output read as input?

#32 laura-budurlean closed 5 years ago
0
Fix HGVSc parsing from VEP annotation

#31 fernanda-rodrigues closed 5 years ago
0
can't input maf.file

#30 rescuz closed 5 years ago
2
I couldn't find demo/runDemo.sh /pathogenicVariants.vcf

#29 rescuz closed 5 years ago
1
getExAC_MAF not behaving like expected

#28 mmoisse closed 5 years ago
0
Fixed mismatch in getRefAltAminoAcids

#27 mmoisse closed 5 years ago
0
PS1 is samePeptideChange

#26 mmoisse closed 5 years ago
0
isConflicted only if path and bening

#25 mmoisse closed 5 years ago
1
re.match is not working like intended

#24 mmoisse closed 5 years ago
2
clinical_significance_ordered is better

#23 mmoisse closed 5 years ago
0
Fix: always Likely benign and Likely pathogenic

#22 mmoisse closed 5 years ago
0
clinvarDone always true

#21 mmoisse closed 5 years ago
1
I used CharGer. But I got different results.

#20 oghzzang closed 5 years ago
2
Fix bug

#19 icebert closed 5 years ago
3
All Uncertain Significance

#18 ekofman closed 5 years ago
1
could not find amino acid change or intronic change

#17 HeXY0515 closed 5 years ago
2
delete truncated .txt.gz file; uploaded correct one

#16 fernanda-rodrigues closed 6 years ago
0
Dependency files used in PanCanAtlas study.

#15 fernanda-rodrigues closed 6 years ago
0
Data used in PanCanAtlas study.

#14 fernanda-rodrigues closed 6 years ago
0
Revert "Deleted unnecessary files; compressed all into one."

#13 fernanda-rodrigues closed 6 years ago
0
Revert "Data used to run CharGer in the PanCanAtlas study."

#12 fernanda-rodrigues closed 6 years ago
0
Data used to run CharGer in the PanCanAtlas study.

#11 fernanda-rodrigues closed 6 years ago
0
Deleted unnecessary files; compressed all into one.

#10 fernanda-rodrigues closed 6 years ago
0
Data used to run CharGer in the PanCanAtlas study.

#9 fernanda-rodrigues closed 6 years ago
0