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dpeerlab
/
spectra
Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
MIT License
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factor importance and information scores
#47
bpkwee
opened
4 weeks ago
0
run adata.uns['SPECTRA_overlap'].index, and there are some factors without name?
#46
Joyjoyjoyc
opened
1 month ago
1
Specific factors vary based on global.
#45
ktroule
opened
1 month ago
1
Computing factor importance scores
#44
Sandeep-S-K
opened
1 month ago
0
Test continuous integration
#43
Tobiaspk
opened
2 months ago
0
The meaning of gene weight?
#42
yizhang-zoey
opened
3 months ago
1
Does Spectra accept processed expression matrix as the input?
#41
yizhang-zoey
opened
3 months ago
1
Running Spectra with mouse data?
#40
jws777
closed
5 months ago
1
GPU tutorial?
#39
caitsimop
opened
6 months ago
2
Number of cores allocation
#38
WuRAFY
opened
6 months ago
1
Fix GPU model init from gene sets
#37
mxposed
opened
6 months ago
0
Reference the paper
#36
mxposed
opened
7 months ago
0
V0.2.0
#35
Tobiaspk
closed
3 months ago
1
UnboundLocalError: local variable 'is_global' referenced before assignment
#34
GabyBG
opened
8 months ago
2
unbound local variable is_global
#33
joshdempster
opened
8 months ago
1
use_cell_types not implemented in Spectra_gpu
#32
ccruizm
opened
8 months ago
2
issue with self.rho = nn.ParameterDict(self.rho)
#31
deanslee
opened
8 months ago
2
TypeError: SPECTRA_Model.train() got an unexpected keyword argument 'label_factors'
#30
bitcometz
opened
9 months ago
1
Prepare for publishing v010 on pip
#29
Tobiaspk
closed
9 months ago
1
Clean up gene set dictionary in est_spectra
#28
wallet-maker
closed
9 months ago
0
Add message about Convergence
#27
nickp60
opened
11 months ago
0
add message about convergence
#26
nickp60
closed
11 months ago
0
Util function improvements
#25
srose89
closed
11 months ago
1
Unexpected spectra factors and some misc questions
#24
ccruizm
closed
11 months ago
6
spc.est_spectra stalls and go to next step after some epochs
#23
kvshams
opened
1 year ago
0
train() got an unexpected keyword argument 'label_factors'
#22
ccruizm
closed
1 year ago
2
GPU implementation
#21
ccruizm
opened
1 year ago
16
Example notebook is missing
#20
ccruizm
closed
1 year ago
2
TabError: inconsistent use of tabs and spaces in indentation
#19
mostafaismail11
closed
1 year ago
2
Monitoring training
#18
cpuritz
opened
1 year ago
1
Label spectra output
#17
wallet-maker
closed
1 year ago
0
Label spectra output
#16
wallet-maker
closed
1 year ago
0
tutorial typo
#15
kanefos
closed
1 year ago
1
Created using Colaboratory
#14
wallet-maker
closed
1 year ago
0
Fix packaging data
#13
mxposed
closed
1 year ago
2
Add data to setup.py
#12
mxposed
closed
1 year ago
0
Update README.md
#11
wallet-maker
closed
1 year ago
0
Added markup to Colab tutorial
#10
wallet-maker
closed
1 year ago
0
Added Colaboratory tutorial
#9
wallet-maker
closed
1 year ago
0
Error saving / loading when initialize the model with kappa/ rho etc.
#8
ruochiz
closed
1 year ago
3
dictionary format when no cell type labels in adata
#7
AdrienJolly
closed
1 year ago
6
expanded tutorial, added example data
#6
wallet-maker
closed
1 year ago
0
Annotation format requirement
#5
kvshams
closed
1 year ago
3
Error whene gene in of geneset is not contained in anndata
#4
junyho486
closed
1 year ago
6
Error when running spc.est_spectra
#3
france-hub
closed
1 year ago
5
Key Error for est_spectra
#2
KarolineHoller
closed
1 year ago
1
add license
#1
wallet-maker
closed
1 year ago
0