epiverse-trace tutorials-middle issues

epiverse-trace / tutorials-middle

https://epiverse-trace.github.io/tutorials-middle/

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issues

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Translate setup

#109 avallecam closed 1 day ago
1
fix severity terms

#108 avallecam closed 3 days ago
1
fix checklist callout box and figure

#107 avallecam closed 2 days ago
1
rearrange location of HFR challenge

#106 avallecam opened 3 days ago
0
specify which component to replicate: {dplyr} instead of {incidence2}

#105 avallecam opened 3 days ago
0
add reviewed translations

#104 avallecam closed 4 days ago
1
Improve formatting to streamline translation

#103 Bisaloo opened 5 days ago
1
change `|>` to `%>%` for consistency + steps to change shortcut in global options

#102 avallecam opened 6 days ago
0
add pak to install to first chunk

#101 avallecam closed 1 week ago
1
change chains from 3 to 2

#100 avallecam closed 2 weeks ago
1
update plot function xlim argument

#99 avallecam closed 2 weeks ago
1
add summary table of the R packages for epidemic reproduction number

#98 avallecam opened 2 weeks ago
0
create assessment connecting epiparameter with cfr and epichains

#97 avallecam opened 2 weeks ago
0
add preparation callout box with papers of reference

#96 avallecam opened 2 weeks ago
0
Test Spanish translation via babeldown

#95 Bisaloo closed 3 days ago
10
fix lognormal mispecification of mean and sd to meanlog and sdlog

#94 avallecam opened 2 weeks ago
0
fix `EpiNow2::forecast_secondary()` and `EpiNow2::plot.estimate_secondary()`

#93 avallecam closed 2 weeks ago
1
add callout box about the likelihood profile and `p` = maximum likelihood

#92 avallecam opened 2 weeks ago
0
error with `EpiNow2::forecast_secondary()`

#91 avallecam closed 2 weeks ago
0
should we use `stan = stan_opts(method = "vb")` to make github workflows faster to run?

#80 avallecam opened 2 weeks ago
1
prefer to use natural parameter for lognormal distribution

#81 avallecam opened 2 weeks ago
1
update local renv and packages: EpiNow2, cfr, epichains

#79 avallecam closed 2 weeks ago
1
simplify all here paths to only one nested folder called `data/`

#78 avallecam opened 3 weeks ago
0
update {cfr} due to braking change in outputs

#77 avallecam opened 3 weeks ago
0
use {tracetheme}

#76 avallecam opened 4 weeks ago
0
add mention to the observation-delay variations for EpiNow2 and cfr

#75 avallecam opened 1 month ago
0
epichains update

#74 avallecam closed 2 weeks ago
1
homogenize setup across websites

#73 avallecam closed 2 weeks ago
0
full review post-trial 04 and tutorials-middle

#72 avallecam closed 3 weeks ago
2
use multiple chain summary to count threshold

#71 avallecam closed 2 months ago
1
print `sim_chains_max` as useful summary of size and length per chain

#70 avallecam closed 2 months ago
0
collect offspring distribution and generation time to reuse in examples or assessments

#69 avallecam opened 2 months ago
0
add code step for assessments and replace figure

#68 avallecam closed 2 months ago
1
add updated hexlogo in setup

#67 avallecam closed 2 months ago
1
evaluate extreme dispersion parameter for MERS

#66 avallecam opened 2 months ago
0
evaluate to create an isolated episode on contact data using {epicontacts}

#65 avallecam opened 2 months ago
0
evaluate to use `as.function()` to <epidist> objects for cfr and epichains

#64 avallecam opened 2 months ago
0
assess for homogeneous ggplot2 format across episodes

#63 avallecam opened 2 months ago
0
add link to instructos materials

#62 avallecam opened 2 months ago
0
add steps to install rtools for epinow2 in windows computers

#61 avallecam closed 2 months ago
2
add chunk to install packages on superspreading

#60 avallecam closed 2 months ago
1
add installation for superspreading episodes

#59 avallecam closed 2 months ago
1
add {epicontacts}, {fitdistrplus}, {epichains}, {superspreading} to setup page

#58 avallecam closed 2 months ago
0
add "outbreak analytics" to glossary file

#57 avallecam closed 2 months ago
0
remove {covidregionaldata} from setup page

#56 avallecam closed 2 months ago
1
add steps to install Rtools for {EpiNow2} to compile in Windows

#55 avallecam closed 2 months ago
0
add challenge or discussion on the implications of the percent of observations in EpiNow2

#54 avallecam closed 2 months ago
0
add link reminders on access delay distributions in each episodes

#53 avallecam closed 2 months ago
0
fix and explain why the date range to estimate secondary observations

#52 avallecam closed 2 months ago
0
add reminder not to wait until EpiNow2 finish running

#51 avallecam closed 2 months ago
0