epiverse-trace tutorials-middle issues

epiverse-trace / tutorials-middle

https://epiverse-trace.github.io/tutorials-middle/

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update packages to latest versions 2024

#141 avallecam closed 6 days ago
1
clean glossary with repository exclusive entries

#140 avallecam opened 1 week ago
0
fix alt text in setup and Rcpp in glossary

#139 avallecam opened 1 week ago
0
Material on reconstructing transmission chains

#138 jamesmbaazam opened 1 week ago
0
translate `superspreading-estimate.Rmd` and `superspreading-simulate.Rmd`

#137 avallecam opened 2 weeks ago
0
review spanish translation in `locale/es/episodes/create-forecast.Rmd`

#136 avallecam opened 2 weeks ago
0
add alt text to all figure in episodes

#135 avallecam opened 2 weeks ago
0
add cholera challenge for Rt and CFR based on case study

#134 avallecam opened 3 weeks ago
0
add challenges to use climateR0

#133 avallecam opened 3 weeks ago
0
add content on cfr estimation from individual data

#132 avallecam opened 3 weeks ago
0
Update 70 packages

#131 Bisaloo opened 3 weeks ago
1
Update Workflows to Version 0.16.9

#130 Bisaloo closed 3 weeks ago
1
Suggestion for episode addition: include application of {epireview}

#129 adamkucharski opened 3 weeks ago
0
remove spoiler callout to make a forecast plot

#128 avallecam opened 1 month ago
0
Set carpentry setting to epiverse-trace

#127 Bisaloo closed 3 weeks ago
1
update renv for new versions of epiparameter, EpiNow2 and epichains

#126 avallecam opened 1 month ago
0
add epichains installation from CRAN

#125 avallecam closed 1 month ago
2
include epiparameter shinyapp in materials (tutorials, slides, challenges)

#124 avallecam opened 1 month ago
0
review LICENSE of figures used in episodes

#123 avallecam closed 1 month ago
1
add challenge about epiparameter output interpretation

#122 avallecam opened 1 month ago
0
replace figure on "evidence for variation in individual reproductive number" by Lloyd-Smith et al., 2005

#121 avallecam opened 1 month ago
0
add `sessioninfo::session_info()` as a function to report issues with package function

#120 avallecam opened 1 month ago
0
add data wrangling challenge to get required input columns for `{cfr}`

#119 avallecam opened 1 month ago
0
add callout box `finalsize::r_eff()` after quantifying transmission?

#118 avallecam opened 2 months ago
0
add best practices for estimating and reporting delay distributions

#117 avallecam opened 2 months ago
0
add Posit Cloud emergency alternative in package installation section

#116 avallecam opened 2 months ago
0
change all `epidist` to `epiparameter`

#115 avallecam opened 3 months ago
0
add link to catalog of distribution functions and Distribution Zoo

#114 avallecam opened 3 months ago
0
review to move text to read on cfr methods after the coding assessments

#113 avallecam opened 3 months ago
0
add cfr summative assessment scenario to workshop materials

#112 avallecam opened 4 months ago
1
Backport Spanish tweaks from tutorials-middle-es

#111 Bisaloo closed 3 weeks ago
1
remove redundant code and omit natural parameters

#110 avallecam closed 4 months ago
1
Translate setup

#109 avallecam closed 4 months ago
1
fix severity terms

#108 avallecam closed 4 months ago
1
fix checklist callout box and figure

#107 avallecam closed 4 months ago
1
rearrange location of HFR challenge

#106 avallecam opened 4 months ago
0
specify which component to replicate: {dplyr} instead of {incidence2}

#105 avallecam opened 4 months ago
0
add reviewed translations

#104 avallecam closed 4 months ago
1
Improve formatting to streamline translation

#103 Bisaloo closed 3 weeks ago
1
change `|>` to `%>%` for consistency + steps to change shortcut in global options

#102 avallecam opened 4 months ago
0
add pak to install to first chunk

#101 avallecam closed 5 months ago
1
change chains from 3 to 2

#100 avallecam closed 5 months ago
1
update plot function xlim argument

#99 avallecam closed 5 months ago
1
add summary table of the R packages for epidemic reproduction number

#98 avallecam opened 5 months ago
0
create assessment connecting epiparameter with cfr and epichains

#97 avallecam opened 5 months ago
0
add preparation callout box with papers of reference

#96 avallecam opened 5 months ago
0
Test Spanish translation via babeldown

#95 Bisaloo closed 4 months ago
10
fix lognormal mispecification of mean and sd to meanlog and sdlog

#94 avallecam opened 5 months ago
0
fix `EpiNow2::forecast_secondary()` and `EpiNow2::plot.estimate_secondary()`

#93 avallecam closed 5 months ago
1
add callout box about the likelihood profile and `p` = maximum likelihood

#92 avallecam opened 5 months ago
0