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fgcz
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prolfqua
Differential Expression Analysis tool box R lang package for omics data
https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.2c00441
MIT License
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add path to install.packages() docs
#86
nickdelgrosso
opened
2 days ago
0
Update README.md
#83
wolski
closed
1 week ago
0
Apply moderation to merged contrasts or to linear model only?
#82
Roman-Si
opened
2 weeks ago
1
How can I re-arrange my samples in a plot in prolfqua
#81
jjGG
opened
2 weeks ago
1
Track gap filling / imputed values
#80
wolski
opened
1 month ago
0
how to enter a data table
#79
AryLech
closed
1 month ago
1
Please provide an example how to create input data by hand
#78
chhh
closed
1 month ago
9
tidyMQ_ProteinGroups fiunction is not working
#77
animesh
closed
1 month ago
3
Update README.md
#76
wolski
closed
1 month ago
0
simulate additional data
#75
wolski
opened
2 months ago
0
remove dependencies from basic model and interaction model
#74
wolski
opened
2 months ago
0
Update r.yaml
#73
wolski
closed
2 months ago
0
remove dependecy on DT
#72
wolski
opened
2 months ago
0
Contrast function mixes conditions in WaldTest output
#71
Roman-Si
closed
1 month ago
5
review ContrastsMissing get_contrasts
#70
wolski
opened
2 months ago
3
Issue with setup_analysis in comparing2groups vignette
#68
jrhougland
closed
5 months ago
11
volcano plot with fixed ylim (scales) cannot be "freed up" with scales="free"
#67
jjGG
closed
5 months ago
5
Refactor v1
#66
wolski
closed
5 months ago
0
add in-silico talk
#65
cpanse
closed
5 months ago
1
Glm support
#64
wolski
closed
6 months ago
1
color densities using factor variable
#63
wolski
opened
7 months ago
0
Citation points to bioRxiv
#61
micwij
closed
8 months ago
1
Reduce package size
#58
wolski
closed
3 months ago
2
FragPipe v.19.1 combined_protein output not working with prolfqua::tidy_FragPipe_combined_protein
#57
mart5176
closed
1 year ago
1
Sample Rscript to process fragpipe lfqMBR outputfile
#56
BenSamy2020
closed
1 year ago
1
Error at normalisation step
#55
clawless-inoviv
closed
1 year ago
5
Error with setup_analysis()
#54
amechakra
closed
1 year ago
4
DiaNN read report function
#53
clawless-inoviv
closed
1 year ago
3
Remove plot_FDPvsTPR from Benchmark
#52
wolski
closed
1 year ago
0
Add Precision Recall plot to Benchmark class
#51
wolski
closed
1 year ago
0
Rename ContrastsSimpleImpute to ContrastsMissing.
#50
wolski
closed
1 year ago
0
Spellcheck text in vignettes
#49
wolski
closed
1 year ago
1
Broken links to Article source files
#48
fabianegli
closed
1 year ago
1
simplify r.yaml
#47
wolski
closed
1 year ago
0
Use pre-commit hooks for consistent code formatting and more
#46
fabianegli
closed
1 year ago
2
done with modelling 2 factors
#45
jjGG
closed
1 year ago
0
Add unit test for Contrasts parser
#44
cpanse
opened
1 year ago
0
J gedits after cp - last jg pr of the week
#43
jjGG
closed
1 year ago
0
Text cosmetics
#42
cpanse
closed
1 year ago
0
J gedits after cp first parts
#41
jjGG
closed
1 year ago
0
QualityControlAndSampleSizeEstimation.Rmd
#40
cpanse
closed
1 year ago
1
Install local prolfqua for CI
#39
cpanse
closed
1 year ago
0
Enable codecov in CI workflow
#38
cpanse
closed
1 year ago
0
codecov
#37
cpanse
closed
1 year ago
0
Unify naming conventions
#36
cpanse
closed
1 year ago
3
add unit/class/function tests
#35
cpanse
closed
7 months ago
0
covr - Test Coverage for prolfqua
#34
cpanse
closed
1 year ago
2
Create CODE_OF_CONDUCT.md
#33
wolski
closed
2 years ago
0
remove Contrasts$get_linfct() from Contrast Interface
#32
wolski
closed
3 months ago
1
Simple Impute - if mean below 10% - diff to be estimated at 0
#29
jjGG
closed
2 years ago
2
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