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fhcrc
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taxtastic
Create and maintain phylogenetic "reference packages" of biological sequences.
GNU General Public License v3.0
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Get ready for new NCBI Taxonomy
#171
crosenth
opened
2 weeks ago
0
Testing
#170
crosenth
closed
1 month ago
0
Testing
#169
crosenth
closed
1 month ago
0
Testing
#168
crosenth
closed
1 month ago
0
Testing
#167
crosenth
closed
1 month ago
0
Testing
#166
crosenth
closed
1 month ago
0
Testing
#165
crosenth
closed
1 month ago
0
Testing
#164
crosenth
closed
1 month ago
0
Testing
#163
crosenth
closed
1 month ago
0
Testing
#162
crosenth
closed
1 month ago
0
testing commit
#161
crosenth
closed
1 month ago
0
testing commit
#160
crosenth
closed
1 month ago
0
Modifications to support iqtree.
#159
jgolob
closed
3 months ago
0
Add logic to generate taxonomy4blast.sqlite3 database
#158
dhoogest
opened
6 months ago
4
Bump jinja2 from 3.1.2 to 3.1.3
#157
dependabot[bot]
closed
3 weeks ago
1
ftp download link times out
#156
nhoffman
closed
11 months ago
2
Error is pplacer using taxtastic
#155
lpipes
closed
7 months ago
6
TypeError: MetaData.reflect() missing 1 required positional argument: 'bind'
#154
lpipes
closed
1 year ago
1
152 faster pg load
#153
nhoffman
closed
1 year ago
0
Improve efficiency of postgres taxonomy database creation
#152
nhoffman
closed
1 year ago
2
MetaData.reflect() missing 1 required positional argument: 'bind'
#151
lpipes
closed
1 year ago
1
pplacer error when using taxtastic refpkg
#150
yifeng-evo
closed
1 year ago
1
Added support for headerless txt files
#149
crosenth
closed
1 year ago
0
build docs using a github action
#148
nhoffman
closed
2 years ago
1
Links in readme file broken
#147
BenKuhnhaeuser
closed
1 year ago
1
Error building db, fixed using older versions from NCBI
#146
nickp60
closed
1 year ago
1
Add tree model (.bestModel) to taxit create refpkg creation
#145
crosenth
closed
3 years ago
2
Raxmlng
#144
jgolob
closed
3 years ago
2
Check for circular lineages in taxit new_database
#143
crosenth
closed
11 months ago
1
Update TaxNode.from_taxtable classmethod to include logic for support of unordered ranks
#142
dhoogest
closed
3 years ago
1
WIP: minimal adaptations from 0.9.0 release to handle new/unordered ranks
#141
dhoogest
closed
3 years ago
2
closes #134, include is_valid in the fields upserted in add_node fn
#140
dhoogest
closed
4 years ago
2
improve `new_database` subcommand performance when targeting postgresql db
#139
dhoogest
closed
1 year ago
8
Remove official Python 2 support
#138
crosenth
closed
4 years ago
3
133 new ranks
#137
crosenth
closed
4 years ago
5
ValueError: u'clade' is not in list
#136
santcamille
closed
4 years ago
2
incorporate new ranks in order specified by @crosenth
#135
dhoogest
closed
4 years ago
2
update_nodes not incorporating is_valid
#134
dhoogest
closed
4 years ago
9
taxit new_database fails during node update for newer NCBI db dumps
#133
dhoogest
closed
4 years ago
13
raxml-ng compatibility
#132
jgolob
closed
11 months ago
2
130 raxml regex fix
#131
jgolob
closed
5 years ago
0
raxml regex too permissive
#130
jgolob
closed
5 years ago
0
update installation instructions
#129
nhoffman
opened
5 years ago
1
taxtable: ValueError: 'section' is not in list
#128
openpaul
closed
5 years ago
3
taxtable produes malformed column names
#127
bowmanjeffs
closed
1 year ago
2
Add subcommand 'get-descendants'
#126
nhoffman
closed
5 years ago
1
Provide regular expression defining named/unnamed externally
#125
nhoffman
closed
1 year ago
1
ncbi new_database failing unique constrain on `names`
#124
dhoogest
closed
5 years ago
7
ValueError: Table "nodes" is missing from the input database.
#123
RyloByte
closed
1 year ago
1
RAxML info parsing bug
#122
jgolob
closed
5 years ago
0
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