fractal-analytics-platform fractal-tasks-core issues

fractal-analytics-platform / fractal-tasks-core

Main tasks for the Fractal analytics platform

https://fractal-analytics-platform.github.io/fractal-tasks-core/

BSD 3-Clause "New" or "Revised" License

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issues

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Relax numpy dependency to `<=2.1.0`

#821 tcompa opened 3 months ago
2
Update README & task list

#820 jluethi closed 3 months ago
2
Ensure correct ordering of acquisition in multiplexing converter

#819 jluethi opened 3 months ago
0
Bump docs dependencies

#818 tcompa closed 3 months ago
1
Use new zenodo datasets in tests

#817 tcompa closed 3 months ago
1
Bump torch from 2.0.0 to 2.2.0

#816 dependabot[bot] closed 3 months ago
1
Fix docs build

#815 tcompa closed 3 months ago
0
Add different projection methods

#814 jluethi closed 3 months ago
2
Add min & mean projection

#813 jluethi closed 3 months ago
0
Cellvoyager converter improvements

#812 jluethi closed 3 months ago
1
Fix Cellpose output ROI tables when using masking ROI table inputs

#811 jluethi closed 3 months ago
2
Cellpose output ROI table label duplication when using masking ROI table input

#810 jluethi closed 3 months ago
0
[auto] Update dependencies in `poetry.lock`

#809 tcompa closed 3 months ago
1
EXPERIMENTAL - Change default for `CellposeModelParams` argument

#808 tcompa closed 3 months ago
2
Modify call signature of cellpose task

#807 tcompa closed 3 months ago
1
Update APX branch in manifest_external_packages.yml

#806 tcompa closed 4 months ago
3
[auto] Update dependencies in `poetry.lock`

#805 tcompa closed 4 months ago
2
Release 1.1.1

#804 tcompa closed 4 months ago
1
Import errors when using `tasks._registration_utils.py` without `fractal-tasks` extra

#803 tcompa closed 3 months ago
0
Take decision on Pydantic version for core library and dev tools.

#802 tcompa closed 4 months ago
2
Pydantic v2 second attempt jsonschema

#801 tcompa closed 4 months ago
1
Allow overwrite of existing image in apply registration

#800 jluethi opened 4 months ago
0
Minor fixes for `calculate_registration_image_based`

#799 tcompa closed 4 months ago
1
Fix error handling in `calculate_registration_image_based`

#798 tcompa closed 3 months ago
1
Improve type hints and docstring for calculate_registration_image_based

#797 tcompa closed 4 months ago
4
Review tests of external-package JSON-Schema generation

#796 tcompa closed 4 months ago
1
[DO NOT MERGE] remove `anyOf` from pydantic v2 schema

#795 tcompa closed 4 months ago
1
Remove `anyOf` from pydantic v2 schema

#794 tcompa closed 4 months ago
1
Fully move to Pydantic v2

#793 lorenzocerrone closed 4 months ago
11
Improve testing of JSON-schema generation

#792 tcompa closed 4 months ago
1
Move JSON-schema generation to Pydantic v2

#791 tcompa closed 4 months ago
0
Move core-library and tasks to Pydantic V2

#790 tcompa closed 4 months ago
0
Fix for yx images in Cellpose task

#789 jluethi closed 4 months ago
1
Support 2D yx data in Cellpose task

#788 jluethi closed 4 months ago
0
[ngio] Refactor masked_loading_wrapper logic to do relabeling in the masking step

#787 jluethi opened 4 months ago
1
Fix Cellpose segmentation with masking ROI tables & relabeling

#786 jluethi closed 4 months ago
3
Cellpose relabeling & masked_loading interaction leads to relabeling objects multiple times

#785 jluethi closed 4 months ago
0
[auto] Update dependencies in `poetry.lock`

#784 tcompa closed 4 months ago
1
Bug fix in masked_loading ROI table reading in case that obs label ID is string of a float

#783 nrepina closed 4 months ago
0
Make multiplexing converter work with arbitrarily named acquisitions

#782 jluethi closed 3 months ago
1
Fixes for MIP task

#781 jluethi closed 4 months ago
1
MIP task leads to missing .zgroup file on the row level

#780 jluethi closed 4 months ago
0
Review/optimize use of `get_overlapping_pairs_3D` in Cellpose task

#779 tcompa opened 4 months ago
4
Fix wrong repeated overlap check for bounding-boxes in cellpose task

#778 tcompa closed 4 months ago
5
Add operio-fractal to task docs

#777 tcompa closed 5 months ago
1
Add operio-fractal to task list on doc page

#776 jluethi closed 5 months ago
3
Test Python 3.12 in CI

#775 tcompa closed 4 months ago
1
[auto] Update dependencies in `poetry.lock`

#774 tcompa closed 5 months ago
1
Relax pip v24.0 pin in `manifest_external_packages.yml`

#773 tcompa closed 3 months ago
0
Relax Pydantic version update

#772 lorenzocerrone closed 5 months ago
3

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