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fractal-analytics-platform
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fractal-tasks-core
Main tasks for the Fractal analytics platform
https://fractal-analytics-platform.github.io/fractal-tasks-core/
BSD 3-Clause "New" or "Revised" License
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Task output API
#679
tcompa
closed
2 months ago
6
Consider including `OMEZarrImage` class in fractal-tasks-core
#678
jluethi
opened
3 months ago
1
Review whether `zarr_url`s have trailing slash or not
#677
jluethi
opened
3 months ago
8
Write version in plate attributes
#676
jluethi
closed
2 months ago
3
Ensure tasks that add images to a well update well metadata
#675
jluethi
closed
2 months ago
2
`zenodo_images_multiplex_shifted` fixture fails with Pillow error
#674
tcompa
closed
2 months ago
1
[auto] Update dependencies in `poetry.lock`
#673
tcompa
closed
2 months ago
0
Masking ROI tables should use the labels as index of the table as well
#672
jluethi
opened
3 months ago
0
Update tasks to Fractal 2.0
#671
jluethi
closed
2 months ago
17
Decide on name for zarr path / location identifier & unify use across the repo
#670
jluethi
closed
3 months ago
1
Update tasks to support Fractal V2
#669
jluethi
closed
2 months ago
1
[auto] Update dependencies in `poetry.lock`
#668
tcompa
closed
3 months ago
1
[auto] Update dependencies in `poetry.lock`
#667
tcompa
closed
3 months ago
1
[auto] Update dependencies in `poetry.lock`
#666
tcompa
closed
3 months ago
1
Update Illumination Correction task to expose ROI_table name selection
#665
jluethi
closed
3 months ago
1
[auto] Update dependencies in `poetry.lock`
#664
tcompa
closed
4 months ago
1
Better support for OME-Zarr with singleton T dimension
#663
BioinfoTongLI
opened
4 months ago
11
tables create by `import_ome_zarr` cannot be loaded by `illumination_correction`
#662
BioinfoTongLI
closed
3 months ago
3
[auto] Update dependencies in `poetry.lock`
#661
tcompa
closed
4 months ago
1
Drop assumption that Zarr HCS plates will contain .zarr in their filename
#660
jluethi
opened
4 months ago
0
Remove unnecessary split of component in well & plate info in cellpose task
#659
jluethi
closed
3 months ago
2
[auto] Update dependencies in `poetry.lock`
#658
tcompa
closed
4 months ago
1
[DO NOT MERGE] Extend cellpose support to `<3.1`
#657
tcompa
closed
4 months ago
0
[DO NOT MERGE] Test cellpose 3
#656
tcompa
closed
4 months ago
0
Manage Cellpose 3.0 transition
#655
jluethi
opened
4 months ago
2
[auto] Update dependencies in `poetry.lock`
#654
tcompa
closed
4 months ago
1
[auto] Update dependencies in `poetry.lock`
#653
tcompa
closed
4 months ago
1
In component refactor, ensure consistency about trailing slashes
#652
jluethi
closed
2 months ago
1
Review how-to-release docs page
#651
tcompa
closed
3 weeks ago
0
Expand cellpose options
#650
jluethi
closed
4 months ago
31
Expose additional cellpose options in the task
#649
jluethi
closed
4 months ago
2
[auto] Update dependencies in `poetry.lock`
#648
tcompa
closed
5 months ago
1
Update setup-python to v5 in all GitHub actions #1192
#647
tcompa
closed
2 months ago
0
Bump jupyter-lsp from 2.2.0 to 2.2.2
#646
dependabot[bot]
closed
5 months ago
1
Update poetry lock
#645
tcompa
closed
5 months ago
1
Bump fonttools from 4.42.1 to 4.43.0
#644
dependabot[bot]
closed
5 months ago
0
Bump jinja2 from 3.1.2 to 3.1.3
#643
dependabot[bot]
closed
5 months ago
0
[DO NOT MERGE] Add `test_workflow_secondary_labeling_two_channels`
#642
tcompa
closed
5 months ago
1
"Illumination correction" task requires additional instructions on how to generate illumination profiles
#641
adrtsc
closed
1 day ago
2
Fix masked-loading when using two channels in cellpose task.
#640
tcompa
closed
5 months ago
1
Support more than one channel when masking background
#639
franziskamoos
closed
5 months ago
3
Handle race condition in Apply Registration to image task better
#638
jluethi
closed
5 months ago
3
Add high-level load_roi function
#637
jluethi
opened
6 months ago
0
Feature wish Yokogawa converter: Improve subset selection
#636
jluethi
opened
6 months ago
2
Refactor tests
#635
tcompa
opened
6 months ago
0
Refactor `prepare_label_group`?
#634
tcompa
opened
6 months ago
0
Refactor `is_ROI_table_valid`
#633
tcompa
opened
6 months ago
0
Define abstract `read_table` helper function
#632
tcompa
opened
6 months ago
2
Refactor core-library modules
#631
tcompa
closed
6 months ago
13
Bump jupyter-server from 2.7.2 to 2.11.2
#630
dependabot[bot]
closed
6 months ago
0
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