fractal-analytics-platform fractal-tasks-core issues

fractal-analytics-platform / fractal-tasks-core

Main tasks for the Fractal analytics platform

https://fractal-analytics-platform.github.io/fractal-tasks-core/

BSD 3-Clause "New" or "Revised" License

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issues

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Rename `reference_cycle` into `reference_acquisition`

#719 tcompa closed 7 months ago
3
Add filelock dependency

#718 tcompa closed 7 months ago
1
[auto] Update dependencies in `poetry.lock`

#717 tcompa closed 7 months ago
1
To define: is `reference_cycle` the right argument name?

#716 tcompa closed 7 months ago
2
1536 well plates cellvoyager

#715 jluethi closed 7 months ago
10
Use `fork` multiprocessing context in test

#714 tcompa closed 7 months ago
1
Debug/fix filelock test on macos

#713 tcompa closed 7 months ago
2
Add `filelock` to dependencies

#712 tcompa closed 7 months ago
0
BROKEN - debug filelock/mutliprocessing/macos issue

#711 tcompa closed 7 months ago
1
675 well metadata updates

#710 jluethi closed 7 months ago
9
703 fix illum corr no overwrite

#709 jluethi closed 7 months ago
11
`plate_ones.zarr` test data is missing plate & well metadata

#708 jluethi closed 7 months ago
0
Fix how reference cycle is determined in registration tasks

#707 jluethi closed 7 months ago
5
Make all task names title case & cleanup task parameter naming/ordering

#706 jluethi closed 7 months ago
5
[auto] Update dependencies in `poetry.lock`

#705 tcompa closed 7 months ago
1
Enable other packages reusing tasks from fractal-tasks-core compound tasks

#704 jluethi opened 7 months ago
3
Fix illumination_correction without overwrite

#703 jluethi closed 7 months ago
1
Propagate package argument in create-manifest

#702 tcompa closed 7 months ago
1
Fix import-ome-zarr `types` extraction, when no ROI tables are created

#701 tcompa closed 7 months ago
0
Review new-image attributes generated by import-ome-zarr

#700 tcompa closed 7 months ago
0
Does dual overwrite parameter in init task & compute task make sense?

#699 jluethi closed 7 months ago
1
Check Task name consistency

#698 jluethi closed 7 months ago
0
Update parameter names in Illumination Correction Task

#697 jluethi closed 7 months ago
0
Add unit tests for `fractal_tasks_core/tasks/copy_ome_zarr_hcs_plate.py` helper functions

#696 tcompa opened 7 months ago
0
In `calculate_registration_image_based`, should we check that `zarr_url != reference_zarr_url`?

#695 tcompa opened 7 months ago
1
Add test that validates NGFF metadata after copy-ome-zarr

#694 tcompa closed 7 months ago
2
Add unit test for `create_well_acquisition_dict`

#693 tcompa opened 7 months ago
0
Add unit test for `get_tables_list_v1`

#692 tcompa opened 7 months ago
0
Order of task arguments in the schema

#691 jluethi closed 7 months ago
1
Revert local version changes, and make a `1.0.0a0` prerelease

#690 tcompa closed 7 months ago
1
Minor changes to v2 branch

#689 tcompa closed 7 months ago
0
Test the multi-plate case of `create_cellvoyager_ome_zarr_init`

#688 jluethi closed 1 month ago
2
Illumination Correction with Channel parallelisation

#687 jluethi opened 7 months ago
0
Update testing helper functions

#686 jluethi closed 7 months ago
0
Illumination correction testing: Also test overwrite=False

#685 jluethi closed 7 months ago
0
Add tests for converting 2D data

#684 jluethi closed 7 months ago
0
Improve handling of potential existing zarr files in apply_registration_to_image

#683 jluethi opened 7 months ago
0
Re-enable manifest validation test

#682 tcompa closed 7 months ago
0
Review NGFF models & Fractal OME-Zarr models

#681 tcompa opened 7 months ago
4
Bump pillow from 10.2.0 to 10.3.0

#680 dependabot[bot] closed 7 months ago
1
Task output API

#679 tcompa closed 7 months ago
6
Consider including `OMEZarrImage` class in fractal-tasks-core

#678 jluethi closed 1 month ago
2
Review whether `zarr_url`s have trailing slash or not

#677 jluethi opened 8 months ago
8
Write version in plate attributes

#676 jluethi closed 7 months ago
3
Ensure tasks that add images to a well update well metadata

#675 jluethi closed 7 months ago
2
`zenodo_images_multiplex_shifted` fixture fails with Pillow error

#674 tcompa closed 7 months ago
1
[auto] Update dependencies in `poetry.lock`

#673 tcompa closed 7 months ago
0
Masking ROI tables should use the labels as index of the table as well

#672 jluethi opened 8 months ago
0
Update tasks to Fractal 2.0

#671 jluethi closed 7 months ago
17
Decide on name for zarr path / location identifier & unify use across the repo

#670 jluethi closed 8 months ago
1

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