ge11232002 CNEr issues - Githubissues

ge11232002 / CNEr

Conserved Noncoding Elements (CNEs) Identification and Visualisation

Other

3 stars 5 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Error installing on a miniconda environment

#27 cihaterdogan opened 9 months ago
0
Test run human hg38 v danio danRer10 chr1 failed

#26 seburgess opened 2 years ago
0
rmsk fetch error

#25 mattiasaine opened 2 years ago
0
Rtest error:invalid class “CNE” object: The file `assembly1Fn` must exist!

#24 fubingting closed 3 years ago
1
Error installing on linux

#23 ankushs0128 opened 3 years ago
1
License unclear

#22 rekado opened 4 years ago
1
Error in my.system(cmd) : res == 0 is not TRUE

#21 kinerett opened 5 years ago
11
Error when running script

#20 lorrainea opened 6 years ago
2
A step size for making the density tracks.

#19 ge11232002 opened 7 years ago
0
extractCNEsFromGRBs function?

#18 dpolychr closed 7 years ago
1
Error in fetch(key) : lazy-load database '/Library/Frameworks/R.framework/Versions/3.3/Resources/library/CNEr/help/CNEr.rdb' is corrupt

#17 dpolychr closed 8 years ago
1
"R encountered a fatal error" ceScan function

#16 dpolychr closed 8 years ago
1
syntenicDotplot function man page

#15 dpolychr closed 8 years ago
1
queryCNEData function man page

#14 dpolychr closed 8 years ago
1
in the man page for the cneMerge function, the first example returns 0 pairs and 0 metadata columns

#13 dpolychr closed 8 years ago
1
Shall we always use coordinates on positive strand for Axt?

#12 ge11232002 closed 8 years ago
1
function to make the coordiates of query alignments

#11 ge11232002 closed 8 years ago
1
when readAxt, fill seqinfo when available

#10 ge11232002 closed 8 years ago
1
circular plot for axt

#9 ge11232002 closed 8 years ago
0
vignette requires BiocStyle, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Drerio.UCSC.danRer10

#8 dpolychr closed 8 years ago
0
power-law for inter-CNE distances

#7 ge11232002 closed 8 years ago
1
add synteny plot for axt

#6 ge11232002 closed 8 years ago
0
add dotplot for axt file

#5 ge11232002 closed 8 years ago
1
Figure out why LazyData: yes causes warning

#4 ge11232002 opened 8 years ago
0
Fix the ensembl query in vignette

#3 ge11232002 closed 8 years ago
1
makeGRBs output # of CNEs

#2 ge11232002 closed 8 years ago
1
CNEr: axt to RleList with match or mismatach value

#1 ge11232002 opened 8 years ago
0