genome docker-basespace_chromoseq issues

genome / docker-basespace_chromoseq

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issues

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Issues in Dockerfile

#34 Sanaz01 opened 2 weeks ago
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V17 updates

#33 johnegarza closed 4 years ago
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updates to scripts, files, etc.

#32 dhspence closed 4 years ago
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Fix VEP filter

#31 dhspence closed 5 years ago
1
synced with genome

#30 dhspence closed 4 years ago
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needed to fix bed files

#29 dhspence closed 5 years ago
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json output for make_report.py

#28 dhspence closed 5 years ago
1
a few more minor changes

#27 dhspence closed 5 years ago
1
new dockerfile and other changes

#26 dhspence closed 5 years ago
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New reporting script and other changes

#25 dhspence closed 5 years ago
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merged again

#24 dhspence closed 5 years ago
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Smaller docker image, new WDL

#23 dhspence closed 5 years ago
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Fixed bug in reporter script

#22 dhspence closed 5 years ago
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Used basespace version as master to update LSF version

#21 johnegarza closed 5 years ago
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Fixed pysam

#20 dhspence closed 5 years ago
1
Need to normalize SNVs/indels to make single genotype VCF file

#19 dhspence closed 5 years ago
1
fixed bug in automation script

#18 dhspence closed 5 years ago
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More updates to the automation script

#17 dhspence closed 5 years ago
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Change dragen process to germline app with alignment only

#16 dhspence closed 5 years ago
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Some error checking on chromoseq inputs

#15 dhspence closed 4 years ago
1
Make graphical, editable report

#14 dhspence opened 5 years ago
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Improve reporting script

#13 dhspence closed 5 years ago
1
Additional annotation for SV VCF file

#12 dhspence closed 5 years ago
1
Convert CNV analysis to VCF format

#11 dhspence closed 5 years ago
1
Updates to perl automation script

#10 dhspence closed 5 years ago
2
Gzipped files in the 2 chromoseq versions

#9 johnegarza closed 5 years ago
1
Update ChromoSeqReporter.hg38.pl

#8 johnegarza closed 5 years ago
0
Figure out Dragen inputs

#7 johnegarza opened 5 years ago
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Investigate multi node configuration

#6 johnegarza closed 4 years ago
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Better logging

#5 johnegarza opened 5 years ago
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Store docker images somewhere else

#4 johnegarza opened 5 years ago
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Docker improvements

#3 johnegarza opened 5 years ago
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Launch script improvements

#2 johnegarza opened 5 years ago
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Clean up input form

#1 johnegarza opened 5 years ago
0