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gexijin
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idepGolem
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generate the KEGG diagram in a popup window
#564
JianYes
opened
12 months ago
1
add a note to select ensembl species first , then STRINGdb species for the same organism
#563
JianYes
closed
11 months ago
1
Deg2 label scatter
#562
ChrisTret
closed
12 months ago
0
fix issue by checking when if sample has all 0s
#561
EricTulowetzke
closed
12 months ago
2
Add GSVA package as dependency
#560
gexijin
closed
1 year ago
1
526 download all modules
#559
EricTulowetzke
closed
1 year ago
0
Pathway tab; add GSVA
#558
gexijin
closed
1 year ago
0
issue #548
#557
jennathor
closed
1 year ago
0
Design file bug, submit button in Pathway tab
#556
gexijin
closed
1 year ago
0
Download option of the enriched region in Genome/Chromosomes, merge the region if it's necessary
#555
JianYes
opened
1 year ago
0
Count data file with comma cannot be read in
#554
JianYes
closed
11 months ago
2
uploading of data file with multiple gene ID columns
#553
JianYes
closed
11 months ago
1
upload of data file with different file style
#552
JianYes
closed
11 months ago
2
Data file can be uploaded in .96, but not in 1.1
#551
JianYes
closed
11 months ago
3
Swap leaf_colors order
#550
ChrisTret
closed
1 year ago
0
idep 1.1 will disconnect automatically if the data format is not acceptable
#549
JianYes
closed
12 months ago
4
Expand all the selections in Setting option in Load Data tab
#548
JianYes
opened
1 year ago
0
Experiment Design fails to load
#547
Moldenke1
closed
11 months ago
4
C stack error with R 4.2.3
#546
EricTulowetzke
closed
8 months ago
2
Add columns with the counts of the up/down/unchanged genes for the enriched pathway
#545
JianYes
opened
1 year ago
0
Add BaseMean column in DEG1 output
#544
JianYes
opened
1 year ago
0
color option for DEG and Pathway plots
#543
JianYes
closed
8 months ago
2
Nothing in Pathway/Significant pathways, but something in Tree, Network and Heatmap
#542
JianYes
opened
1 year ago
0
download the TPM value
#541
JianYes
opened
1 year ago
0
error message in PCA tab for multiple factors
#540
JianYes
opened
1 year ago
2
label top top genes and option of the interactive heatmap
#539
JianYes
opened
1 year ago
0
Complete the report in Pre-Process tab
#538
gexijin
closed
8 months ago
2
Add gene labels on Scatter plot under DEG2 tab
#537
gexijin
closed
11 months ago
1
Add line graphs for k-means clustering (time course data)
#536
gexijin
opened
1 year ago
1
"Do not convert gene IDs" option is not suitable for STRINGdb species
#535
JianYes
opened
1 year ago
0
Example gene IDs function is expected
#534
JianYes
closed
10 months ago
0
upload data and show data in original order
#533
JianYes
closed
11 months ago
1
List the file name after uploading
#532
JianYes
closed
10 months ago
0
Add download options for Pathway/Significant pathway, Tree, Network, KEGG
#531
JianYes
closed
8 months ago
2
Completely remove PREDA
#530
gexijin
closed
1 year ago
0
Remove the information about PREDA
#529
JianYes
closed
1 year ago
2
Add sample names for the heatmaps
#528
JianYes
closed
8 months ago
1
Change color labeling in enrichment networks
#527
gexijin
closed
1 year ago
1
network and table download are needed for tab Network
#526
JianYes
opened
1 year ago
2
Tree plot with blue color for up and red color for down regulation
#525
JianYes
closed
1 year ago
1
color for network in pathway are confused
#524
JianYes
closed
1 year ago
1
cluster change automatically in Clustering/Plot, Genes
#523
JianYes
opened
1 year ago
0
Fix bug with design file
#522
gexijin
closed
1 year ago
1
Comparison of two levels of one factor under the condition of one level of another factor
#521
JianYes
opened
1 year ago
0
no gene name for network plot
#520
JianYes
closed
1 year ago
0
sample name started with number causes error
#519
JianYes
opened
1 year ago
0
interaction cause error in demo data
#518
JianYes
opened
1 year ago
0
Add normalized value demo data and FDR & Fold Change demo data
#517
JianYes
closed
8 months ago
1
Error message when upload one factor experiment design file
#516
JianYes
closed
1 year ago
0
FDR and adjP value file with lots of missing values won't work in idep1.1
#515
JianYes
opened
1 year ago
0
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