greenelab GCB535 issues

greenelab / GCB535

Materials for GCB535 at Penn.

BSD 3-Clause "New" or "Revised" License

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issues

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scRNA-Seq: Set kernel to "R (R-project)" not "R (sagemath)"

#232 bvoight opened 5 years ago
0
Depreciated code: sklearn.cross_validation

#231 bvoight opened 5 years ago
1
Explicitly state that we want work for prelabs done IN The notebook we give them

#230 bvoight opened 5 years ago
0
Gene Expression III: listing "top 10 genes" and top probes

#229 bvoight opened 5 years ago
0
Gene Expression I: getGEOSuppFiles(GEO="GSE35961") no longer works

#228 bvoight closed 3 years ago
1
Gene Expression I: "mice", not "subjects'

#227 bvoight closed 3 years ago
1
Gene Expression I: fix prelab summary for example-pheno.csv

#226 bvoight closed 3 years ago
1
12_ENCODE-II: clarity on files to select

#225 bvoight opened 5 years ago
0
12_ENCODE_prelab: get .pdf of papers on canvas or downloadable

#224 bvoight opened 5 years ago
0
12_ENCODE: fix mark names to match referenced papers

#223 bvoight opened 5 years ago
0
Broad issue: "Have students think more"

#222 bvoight opened 5 years ago
1
Syllabus: fix broken links for plagiarism at end

#221 bvoight closed 3 years ago
2
Change HW number from 13 to 7 (Alignment) - FASTA file

#220 cgreene opened 5 years ago
0
Motif I HW Answer Updates

#219 genestats opened 5 years ago
0
Motif-III Homer analysis: different users can get very different answers

#218 bvoight opened 5 years ago
0
Add SRR info to Syllabus

#217 bvoight closed 3 years ago
1
UNIX-II HW: note that curl will not follow redirect on file

#216 bvoight opened 5 years ago
2
Make a "quick fix" doc for common errors (hints/tips for us) for each module

#215 bvoight opened 5 years ago
0
UNIX: Check we teach ^C (to stop process) and formalize [TAB], ^A, ^E in activities

#214 bvoight closed 3 years ago
1
Unix II prelab typo

#213 jingyaq closed 3 years ago
1
Unix II: Link to data file is broken

#212 jingyaq closed 5 years ago
2
Databases Q8: clarify that it's length of mature mRNA transcript without introns

#211 jingyaq opened 5 years ago
0
Databases: Check numbering of problems (Q5 is listed twice?)

#210 bvoight opened 5 years ago
0
Make keys folder order match course

#209 cgreene closed 5 years ago
1
Update office hours table (note absences)

#208 cgreene closed 5 years ago
1
Update course calendar

#207 cgreene closed 5 years ago
1
Prelab Variation I: broken link

#206 bvoight opened 6 years ago
0
Convert Markdown Course Calendar to .ics events

#205 cgreene closed 3 years ago
2
Written Report: clarify References

#204 bvoight closed 5 years ago
1
Canvas

#203 cgreene closed 5 years ago
0
ML Code confusing

#202 cgreene opened 6 years ago
0
ML: Explain datasets

#201 cgreene opened 6 years ago
0
ML: More types of classifiers

#200 cgreene opened 6 years ago
0
Categorize days by attendance suggestion level

#199 cgreene closed 3 years ago
1
Genetic Variation 2 lacks an images directory.

#198 cgreene closed 5 years ago
2
BrainArray Custom CDF added to gene expression module

#197 cgreene opened 6 years ago
0
Prelim Proposal: Have students actually *Look* at their proposed data

#196 bvoight closed 5 years ago
1
RNA-Seq "Overview" / Preparation document

#195 bvoight opened 6 years ago
0
ML4 & 5 instructions

#194 kelsj closed 5 years ago
1
Genetic Variation I Q15

#193 cgreene closed 5 years ago
1
ML5 should now include a link to "the combinator"

#192 cgreene closed 5 years ago
2
Slider bar for accuracies in ML5 form

#191 cgreene closed 5 years ago
1
Gene Expression III: are there actually NA entries in this list?

#190 bvoight closed 5 years ago
1
Gene Expression III: "annot" on question 6

#189 bvoight closed 5 years ago
1
GeneExpression (I,II): Spec of Phenotype file, extra cel files, "appropriate" cel files

#188 bvoight closed 5 years ago
2
Update ML discussion section for Day 5

#187 cgreene opened 6 years ago
2
ChIP-Seq-II Homework

#186 cgreene closed 5 years ago
0
Interpretation of P value in In_Class_R_2

#185 gwaybio closed 5 years ago
0
ENCODE - II : remind them to use -u flag for questions #3, #4

#184 bvoight closed 5 years ago
0
for R - I: +10 Hufflepuff Points

#183 bvoight opened 6 years ago
0