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guigolab
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bamstats
A command line tool to compute mapping statistics from a BAM file
BSD 3-Clause "New" or "Revised" License
22
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4
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Output only includes general statistics
#33
mulderdt
opened
9 months ago
1
[Unintended] feature: bamstats fails if the number of BAM references exceeds ulimit -n
#32
markb729
opened
3 years ago
0
bamstats not working with Ensembl GTF (with "gene_biotype" attribute)
#31
usergsc
opened
4 years ago
2
Add QC failed/passed reads stats
#30
emi80
opened
4 years ago
0
Option -t requires an argument!
#29
NicMAlexandre
closed
4 years ago
1
Usage of the command line tool
#28
tushardave26
closed
4 years ago
2
NH tag value can have multiple types in BAM format
#27
emi80
opened
5 years ago
0
Difference between Two Histograms Produced
#26
Rohit-Satyam
closed
5 years ago
2
No coverage stats if the annotation does not have `gene` elements
#25
emi80
closed
5 years ago
1
Add protocol info to general stats
#24
emi80
closed
5 years ago
0
Wrong merged intervals with unsorted annotation
#23
emi80
closed
5 years ago
1
Switch to Go Modules
#22
emi80
closed
5 years ago
0
Insert size stats give misleading average and standard deviation
#21
emi80
opened
5 years ago
0
Remove local GOPATH from panic stack trace
#20
emi80
opened
6 years ago
0
Print usage when running without arguments
#19
emi80
closed
6 years ago
0
Picard NH tag is not an unsigned integer
#18
emi80
closed
6 years ago
0
Add stats for RNA-seq following IHEC specs
#17
emi80
closed
6 years ago
0
Create a general method to output JSON from stats.Map
#16
emi80
closed
6 years ago
0
Add Type() to Stats interface
#15
emi80
closed
6 years ago
0
Parse gtf attributes and add them to Feature
#14
emi80
closed
6 years ago
0
Add duplicates count to general stats
#13
emi80
opened
6 years ago
0
Set runtime cpu number as default instead of one
#12
emi80
closed
6 years ago
0
Improve gtf parsing and index generation
#11
emi80
closed
6 years ago
0
Add rnaseq stats and metrics
#10
emi80
closed
6 years ago
0
Use Rtree bulk load for improving annotation index generation
#9
emi80
closed
6 years ago
0
Support annotation in gtf format
#8
emi80
closed
6 years ago
0
Coverage stats are reported for references that are not present in the annotation
#7
emi80
closed
6 years ago
0
Add statistics for reads in +/- strand
#6
emi80
opened
7 years ago
0
Add reference stats
#5
emi80
opened
7 years ago
0
Add support for BAM random access through index
#4
emi80
closed
6 years ago
0
Infer experiment strandedness
#3
emi80
opened
7 years ago
0
Improve annotation index generation
#2
emi80
closed
6 years ago
0
Support compressed annotation file
#1
emi80
closed
6 years ago
0