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harrispopgen
/
mushi
[mu]tation [s]pectrum [h]istory [i]nference
https://harrispopgen.github.io/mushi/
MIT License
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Use forked prox-tv sdist
#77
wsdewitt
closed
2 years ago
0
Python upgrade, and other tidying
#76
wsdewitt
closed
2 years ago
0
Question on Ksfs
#75
RenzoTale88
closed
3 years ago
2
trend penalty piece of cost functions using incorrect difference order
#74
wsdewitt
closed
2 years ago
0
Step-by-step guide from mutyper
#73
RenzoTale88
opened
3 years ago
2
Docs additions
#72
wsdewitt
closed
3 years ago
0
Docstrings and doctests
#71
wsdewitt
closed
3 years ago
0
Accommodate non-uniform time grid in trend filter
#70
wsdewitt
opened
3 years ago
0
spin out `mushi.optimization` module into an independent package
#69
wsdewitt
opened
3 years ago
0
version 1 release candidate
#68
wsdewitt
closed
3 years ago
6
update docs after pipeline overhaul
#67
wsdewitt
closed
3 years ago
1
pipeline overhaul
#66
wsdewitt
closed
3 years ago
1
63 true divide
#65
wsdewitt
closed
3 years ago
0
int division, closes #63
#64
wsdewitt
closed
3 years ago
0
`true_divide` error in folded SFS inference with integer SFS data
#63
wsdewitt
closed
3 years ago
1
Inference of eta using folded SFS
#62
apragsdale
closed
4 years ago
1
Tiny bug in pipeline
#61
terhorst
closed
3 years ago
1
Folded SFS
#60
wsdewitt
closed
3 years ago
1
alternatives to prox-tv dependency
#59
wsdewitt
closed
2 years ago
4
duplicate exponent in ridge term
#58
wsdewitt
closed
4 years ago
1
replace total variation / fused lasso with trend filtering
#57
wsdewitt
closed
3 years ago
2
docsdev
#56
wsdewitt
closed
4 years ago
0
Packagify
#55
wsdewitt
closed
4 years ago
0
mutyper
#54
wsdewitt
closed
4 years ago
0
Baseline
#53
wsdewitt
closed
4 years ago
0
Retool 1 kg pipeline
#52
wsdewitt
closed
4 years ago
0
data-dependent Gram-Schmidt orthogonalization
#51
wsdewitt
closed
4 years ago
15
basic sim notebook gone
#50
kamdh
closed
4 years ago
0
Add dvipng to dependencies
#49
kamdh
closed
4 years ago
0
Ancestral eta fusion
#48
wsdewitt
closed
4 years ago
0
Aitchison geometry
#46
wsdewitt
closed
4 years ago
4
40 time calibration
#45
wsdewitt
closed
4 years ago
0
remove stdpopsim submodule
#44
wsdewitt
closed
4 years ago
0
Notation standardization & improvement
#43
kamdh
closed
4 years ago
6
Three op splitting
#42
wsdewitt
closed
4 years ago
0
generalize 3-operator splitting to 4 operators
#41
wsdewitt
closed
4 years ago
1
time calibration
#40
wsdewitt
closed
4 years ago
30
three operator splitting allows negativity
#37
wsdewitt
closed
4 years ago
23
write more tests
#36
wsdewitt
closed
3 years ago
0
Update docs to reflect newest requirements
#35
kamdh
closed
4 years ago
0
Get rid of logy, logZ transformation
#34
kamdh
closed
4 years ago
2
Autodiff2
#33
wsdewitt
closed
4 years ago
0
Eta fit
#32
wsdewitt
closed
4 years ago
0
Optimization
#31
kamdh
closed
4 years ago
1
test-msprime.ipynb broken
#30
kamdh
closed
4 years ago
0
test.ipynb broken
#29
kamdh
closed
4 years ago
5
stdpopsim directory empty
#28
kamdh
closed
4 years ago
5
Optimization
#27
kamdh
closed
4 years ago
0
1kg
#26
wsdewitt
closed
4 years ago
0
Hard sv thresh
#25
wsdewitt
closed
5 years ago
1
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