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hyanwong
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giglib
MIT License
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Test fwd-sim with a single inversion
#82
hyanwong
closed
6 months ago
1
Add ability to freeze the tables
#81
hyanwong
closed
7 months ago
2
Allow easy editing of table data
#80
hyanwong
closed
4 months ago
1
Make the mrca structure into a class
#79
hyanwong
closed
4 months ago
6
Ideas for visualisation tools
#78
duncanMR
opened
7 months ago
1
Allow variable population sizes & run_more continuation
#77
hyanwong
closed
7 months ago
1
Introducing SVs into the forward simulator
#76
hyanwong
closed
7 months ago
2
Tidy up the simulator classes
#75
hyanwong
closed
7 months ago
1
Add a identical tskit simulator
#74
hyanwong
closed
7 months ago
1
Fwd sim
#73
hyanwong
closed
7 months ago
1
Change internal order of edges
#72
hyanwong
closed
7 months ago
1
Efficient interval intersections
#71
hyanwong
opened
7 months ago
3
Order edges by child time (and ID)?
#70
hyanwong
closed
7 months ago
2
Validate edges on add_row
#69
hyanwong
closed
6 months ago
6
Add to_tree_sequence method
#68
hyanwong
closed
7 months ago
1
Change some variable names
#67
hyanwong
closed
7 months ago
1
tidy comment
#66
hyanwong
closed
7 months ago
1
Storing (L, R) plus value for inverted
#65
hyanwong
opened
7 months ago
2
Implement a basic simplify()
#64
hyanwong
opened
7 months ago
2
Put edge params in right order
#63
hyanwong
closed
8 months ago
1
More tidying of sample_resolve
#62
hyanwong
closed
8 months ago
1
Mrca 2nd pass
#61
hyanwong
closed
7 months ago
4
Minor tidy
#60
hyanwong
closed
8 months ago
1
Neater sample_resolve
#59
hyanwong
closed
8 months ago
1
Make interval transforming routines
#58
hyanwong
closed
8 months ago
1
Switch order of iedge properties
#57
hyanwong
closed
8 months ago
1
Order of iedge items
#56
hyanwong
closed
8 months ago
4
Long-term API ideas: named accessors
#55
hyanwong
opened
8 months ago
0
Restricted simulation that can be simulated backwards and forwards
#54
hyanwong
opened
8 months ago
2
Package
#53
hyanwong
closed
8 months ago
1
Correct test
#52
hyanwong
closed
9 months ago
1
Add simulators
#51
hyanwong
closed
9 months ago
1
Change name to GeneticInheritanceGraphLibrary
#50
hyanwong
closed
9 months ago
1
Changes to tskit-like API
#49
hyanwong
closed
8 months ago
2
Check that coordinates can be converted to integers in `append` and `add_row`
#48
hyanwong
closed
8 months ago
1
Mrca finding
#47
hyanwong
closed
8 months ago
4
Add the graph object
#46
hyanwong
closed
9 months ago
8
When to check GIG consistency
#45
hyanwong
closed
9 months ago
3
Define a "TreeSequence"-like class
#44
hyanwong
closed
8 months ago
10
Change to integer intervals, Use "IEdge" rather than "Edge"
#43
hyanwong
closed
9 months ago
5
Rename "Interval" or "Edge" to "IEdge"
#42
hyanwong
closed
9 months ago
2
Encoding inversions, and integer positions
#41
hyanwong
closed
8 months ago
14
Graph traversal algorithm for matching
#40
hyanwong
closed
6 months ago
5
Switch to integer coordinate space
#39
hyanwong
closed
9 months ago
2
Get tsdate-like algorithms running on a GIG
#38
hyanwong
opened
10 months ago
0
Explore simulations without recombination for cancer genomes
#37
hyanwong
opened
10 months ago
0
Add method to convert BaseTable to dataframe
#36
duncanMR
closed
11 months ago
2
Algorithm to find the tree for a point on the genome of a given sample
#35
duncanMR
opened
11 months ago
5
Make method to convert a GIG table into a Pandas dataframe
#34
duncanMR
closed
11 months ago
4
Construct more GIG examples with combinations of SVs and recombination
#33
duncanMR
opened
11 months ago
12
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