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hyanwong
/
giglib
MIT License
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Tidy some docstrings
#132
hyanwong
closed
4 months ago
1
Update README.md
#131
hyanwong
closed
4 months ago
1
Put link to docs on README page
#130
hyanwong
closed
4 months ago
1
Get uploading artifacts (docs) working
#129
hyanwong
closed
4 months ago
1
Add workflow to generate docs
#128
hyanwong
closed
4 months ago
1
GeneticInheritanceGraphLibrary -> giglib
#127
hyanwong
closed
4 months ago
2
"Pseudo-Roots" and representing ancestral variation
#126
hyanwong
opened
4 months ago
0
Use ruff for linting
#125
hyanwong
closed
4 months ago
2
Change repo name to "giglib"
#124
hyanwong
closed
4 months ago
0
More chromosome testing
#123
hyanwong
closed
6 months ago
1
Change to sorting by child_right (not child_left)?
#122
hyanwong
closed
6 months ago
2
Transposable element (TE) simulations
#121
hyanwong
opened
6 months ago
0
Put chromosomes in MRCA routines
#120
hyanwong
closed
6 months ago
1
Inference from real data: useful references
#119
hyanwong
opened
7 months ago
2
Save some space in chromosome fields
#118
hyanwong
closed
7 months ago
1
Allow initial sizes to be specified for the tables
#117
hyanwong
closed
7 months ago
1
Numpy edge table data
#116
hyanwong
closed
7 months ago
2
Fill out more docs
#115
hyanwong
closed
7 months ago
1
More documentation
#114
hyanwong
closed
7 months ago
1
Extracting haplotypes / DNA sequences
#113
hyanwong
opened
7 months ago
0
Adjust MRCA routines to account for different chromosomes
#112
hyanwong
closed
6 months ago
1
Finding "next most close" MRCAs
#111
hyanwong
opened
7 months ago
0
Create documentation
#110
hyanwong
closed
7 months ago
1
IntFlags in constants.py changes behaviour under python 3.11 (vs 3.10)
#109
hyanwong
closed
7 months ago
1
Use numpy structured array for iedge table
#108
hyanwong
closed
7 months ago
2
Implement chromosomes in sample_resolve
#107
hyanwong
closed
7 months ago
1
Documentation via JupyterBook (and tidy)
#106
hyanwong
opened
7 months ago
5
Major reworking of validation
#105
hyanwong
closed
7 months ago
2
Requirements for a valid GIG (and for a valid `gigl` encoding)
#104
hyanwong
closed
7 months ago
5
Account for chromosome IDs when tracing intervals
#103
hyanwong
closed
6 months ago
4
Choose breakpoints by rejection sampling
#102
hyanwong
opened
8 months ago
1
Add test for infinite time parents
#101
hyanwong
closed
8 months ago
1
Tandem duplications
#100
hyanwong
opened
8 months ago
1
Add plot method to MRCAdict class
#99
duncanMR
closed
7 months ago
9
Tidy docstrings
#98
hyanwong
closed
8 months ago
1
Make MRCA dict into a class
#97
hyanwong
closed
8 months ago
1
Debug fwd sim
#96
hyanwong
closed
8 months ago
2
Should GIGs be allowed to have a node at time=infinity?
#95
hyanwong
closed
8 months ago
2
More efficient seq_len calculation
#94
hyanwong
closed
7 months ago
1
Backward simulations: a possible breakthrough?
#93
hyanwong
opened
8 months ago
1
Think about edge ordering for backward-time simulations
#92
hyanwong
opened
8 months ago
0
set some default generations
#91
hyanwong
closed
8 months ago
1
Table version of find mrcas
#90
hyanwong
closed
8 months ago
3
Change test SV gig
#89
hyanwong
closed
8 months ago
2
Test empty GIGs
#88
hyanwong
closed
8 months ago
1
Move table validation into tables.py
#87
hyanwong
opened
8 months ago
0
Speed up forward simulations
#86
hyanwong
opened
8 months ago
4
Collect simulators into a single test import file
#85
hyanwong
closed
8 months ago
1
Test fwd-sim code with duplications
#84
hyanwong
opened
8 months ago
0
How to *stop* weird crossovers
#83
hyanwong
opened
8 months ago
0
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