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icbi-lab
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nextNEOpi
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
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nextNEOpi in DSL2/tool upgrades?
#35
mantczakaus
closed
1 year ago
1
No such file [...]/references/hg38/gdc/GRCh38.d1.vd1/fasta/hg38.len
#34
richelbilderbeek
closed
1 year ago
2
Provide test data
#33
richelbilderbeek
closed
1 year ago
5
Issue with
#32
mulqueenr
closed
1 year ago
4
Random error with NetMHCII
#31
mantczakaus
closed
1 year ago
4
-resume goes all the way back to SplitIntervals, make_uBAM and Bwa
#30
mantczakaus
closed
1 year ago
3
pVACsec fails on calculating manufacturability for MHC class II
#29
mantczakaus
closed
1 year ago
8
Not able to pull the images from apps-01.i-med.ac.at
#28
mantczakaus
closed
1 year ago
2
cnvkit fails on TESLA dataset patient1 and patient3
#27
mantczakaus
closed
1 year ago
3
NeoFuse fails because output is not stored in MHC_I and MHC_II folders
#26
mantczakaus
closed
1 year ago
1
Error running NeoFuse- cannot find models_class1_pan/models.combined/manifest.csv
#25
mantczakaus
closed
1 year ago
11
Cross-species compatibility
#24
saraahwallace
opened
1 year ago
2
Error executing process > 'make_uBAM (sample1 : normal_DNA)'
#23
rezakj
closed
1 year ago
2
Output file discriptions
#22
rezakj
closed
1 year ago
6
pVACseq is deprecated and it is now called pVACtools
#21
rezakj
closed
1 year ago
3
Problem with CNNScoreVariants
#20
haraldgrove
closed
1 year ago
5
1
#19
kyle-lk
closed
1 year ago
0
nextNEOpi fails
#18
aforsythe
closed
2 years ago
1
Slow process in get_vhla step
#17
KunFang93
closed
2 years ago
3
Filelock safeguard error when run mixcr
#16
KunFang93
closed
2 years ago
10
Patch
#15
maflister
closed
2 years ago
1
Fail to run pipeline in SLURM
#14
KunFang93
closed
2 years ago
4
Error executing process
#13
KunFang93
closed
2 years ago
4
Yara DNA vs RNA DBs
#12
pintoa1-mskcc
closed
2 years ago
1
immunogenicity_scoring
#11
beijish
closed
2 years ago
1
Error executing process > 'mixMHC2pred
#10
beijish
closed
2 years ago
4
corrected path to mixcr git repo file
#9
methylnick
closed
2 years ago
1
Path to MixCR is incorrect
#8
methylnick
closed
2 years ago
1
Error executing process > 'installVEPcache (installVEPcache)'
#7
beijish
closed
2 years ago
6
how to install all required tools？
#6
sunsong95
closed
2 years ago
16
Error executing process with NeoFuse
#5
antaralabiba97
closed
2 years ago
51
Error at install_IEDB process
#4
kevinpryan
closed
2 years ago
12
Error Unknown method
#3
Magisterh1
closed
2 years ago
12
Installation fails due to unsatisfiable constraints
#2
aneichyk
closed
2 years ago
11
HLA parser hotfix
#1
abyssum
closed
3 years ago
0
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