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imgag
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ngs-bits
Short-read sequencing tools
MIT License
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convert legacy data to masked GRCh38
#479
marc-sturm
opened
1 year ago
1
GSvar run tab: show columns processing modus and batch number to sample overview table (lab columns)
#478
marc-sturm
closed
1 year ago
0
ClinVar fails to get proxy settings on the server
#477
ubuntolog
closed
1 year ago
0
Add response codes to HttpHandler
#476
ubuntolog
closed
1 year ago
0
Report server version change to the clients
#475
ubuntolog
closed
1 year ago
0
Print all environment variables in server log when it starts
#474
ubuntolog
closed
1 year ago
0
NovaSeq X SampleSheet
#473
leonschuetz
closed
1 year ago
0
Burden test
#472
leonschuetz
closed
1 year ago
0
germline report: add table with remaining gaps after closing gaps
#470
marc-sturm
closed
1 year ago
0
Add Study in processed sample widget cannot be aborted
#469
Ott-Alexander
closed
1 month ago
0
Trimmed base percentage not correct for long read alignments
#468
jakobmatthes
opened
1 year ago
1
GSvarServer log rotation
#467
ubuntolog
closed
2 months ago
0
GSvarServer gets restarted unexpectedly
#466
ubuntolog
closed
1 year ago
0
Include OncoTree in disease details
#465
Ott-Alexander
closed
1 year ago
0
Enhance logging for server debugging
#464
ubuntolog
closed
1 year ago
0
NGSD: add "processing modus" to "processed sample" table
#463
marc-sturm
closed
1 year ago
1
VcfFile: complete refactoring (less code, less memory consumption)
#462
marc-sturm
closed
1 year ago
0
non personalized cfDNA Report
#461
Ott-Alexander
opened
1 year ago
0
RNA-Report:
#460
Ott-Alexander
opened
1 year ago
0
cfDNA Report
#459
Ott-Alexander
closed
1 year ago
0
Better IGV integration with GSvar
#458
ubuntolog
opened
1 year ago
0
Add exclusion regions to burden test
#457
marc-sturm
closed
1 year ago
2
VcfFile: fixed bug that caused swapping of info values between keys when storing the VCF
#456
marc-sturm
closed
1 year ago
0
improve error handling of API calls
#455
marc-sturm
closed
1 year ago
1
add year or birth to NGSD
#454
marc-sturm
closed
1 year ago
0
GSvarServer: added CFDNA candidates to the server controller
#453
ubuntolog
closed
1 year ago
0
Longread integreation in GSvar
#452
leonschuetz
closed
1 year ago
0
improved variant ranking
#451
marc-sturm
closed
1 year ago
0
Burden test
#450
leonschuetz
closed
1 year ago
0
switch to new VICC classification version
#449
Ott-Alexander
opened
1 year ago
0
Improved GHGA upload
#448
marc-sturm
closed
1 year ago
0
GSvar: refactoring of gap calculation in germline report
#447
marc-sturm
closed
1 year ago
0
Genes to gff
#446
MarvinDo
closed
1 year ago
0
RNA optimization
#445
leonschuetz
closed
1 year ago
0
Missing Content-Type header warnings in GSvar log
#444
ubuntolog
closed
1 year ago
0
Adds cram support
#443
ubuntolog
closed
1 year ago
0
Handle heteroyzgous and mosaic counts separately
#441
marc-sturm
closed
1 year ago
0
NGSDExportAnnotationData: implement parallelization
#440
marc-sturm
closed
1 year ago
1
NGSDExportAnnotationData: speed-up of germline export
#439
marc-sturm
closed
1 year ago
0
heterozygous variant count too high (because of mosaic variant calling)
#438
alex-seitz
closed
1 year ago
5
BedAnnotateGenes Requested key 'ngsd_host' not found in settings
#437
Dianer92
closed
1 year ago
8
add CRAM suppport
#436
marc-sturm
closed
1 year ago
1
Proxy manager
#435
leonschuetz
closed
1 year ago
0
Add GenesToTranscripts and TranscriptsToRegions
#434
marc-sturm
closed
1 year ago
0
BedCoverage cannot find index file
#433
micaela-eisenberg
closed
1 year ago
1
Long reads
#432
leonschuetz
closed
1 year ago
0
move GSvar server to SRV005
#431
marc-sturm
closed
1 year ago
0
NGSDImportHPO new format for phenotype_to_genes.txt
#430
alex-seitz
closed
1 year ago
9
MappinqQC: add QC for raw reads
#429
marc-sturm
closed
1 year ago
0
Update ClinVar submission status on server
#428
marc-sturm
closed
1 year ago
0
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