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imgag
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ngs-bits
Short-read sequencing tools
MIT License
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Download page of GSvar client on gscloud.imgag.de
#512
ubuntolog
closed
4 months ago
0
wrap all tools used in megSAP in singularity
#511
ubuntolog
opened
5 months ago
0
Display diff between the current and default configuration while deploying the server
#510
ubuntolog
closed
5 months ago
0
Improve link to LOVD
#509
ifokkema
closed
5 months ago
4
GSvar: refactoring of gene tab
#508
marc-sturm
opened
5 months ago
0
GSvar: make column order configurable
#507
marc-sturm
opened
5 months ago
0
Somatic report changes
#506
Ott-Alexander
closed
5 months ago
0
VariantRanking: improved prefilter (remove too common variants with splicing-prediction)
#505
marc-sturm
closed
6 months ago
0
Added variant import to open variants that are not in samples/NGSD in GSVar
#504
marc-sturm
closed
7 months ago
0
GSvar fails to restart an analysis when "processing system" is "none"
#503
ubuntolog
closed
3 months ago
1
Open analysis logs in a default application (e.g. Notepad++ on Windows)
#502
ubuntolog
opened
7 months ago
0
NSGD: add callset for small variants
#501
marc-sturm
closed
7 months ago
0
IGV uses an invalid access token after reopening GSvar
#500
ubuntolog
closed
5 months ago
1
NGSDExportGff: add coding start/end
#499
marc-sturm
closed
7 months ago
0
lrQC
#498
leonschuetz
closed
8 months ago
0
NGSDImportEnsembl: fix SNORD118 transcripts on several chromosomes
#497
alex-seitz
closed
7 months ago
4
Add variant import through GSvar
#496
marc-sturm
closed
7 months ago
0
BedLiftOver: '-' in annotations are split in additional columns
#495
leonschuetz
closed
8 months ago
0
Keep URLs alive, if an instance of GSvar is running with a corresponding sample opened
#494
ubuntolog
opened
8 months ago
0
Error while gap calculation
#493
ubuntolog
closed
9 months ago
0
Multithreading for running IGV commands
#492
ubuntolog
closed
9 months ago
0
Data export for CBioPortal
#491
Ott-Alexander
closed
9 months ago
0
VcfAnnotateMaxEntScan: fixed speed issues
#490
marc-sturm
closed
9 months ago
0
Better session and URL cleanup on the server
#489
ubuntolog
closed
9 months ago
0
Oncotree
#488
Ott-Alexander
closed
9 months ago
0
LongReads: Improve GSvar SV filter
#487
leonschuetz
closed
4 months ago
2
Implementation of VcfAnnotateMaxEntScan
#486
MarvinDo
closed
9 months ago
0
Amazon version of GSvarServer
#485
ubuntolog
opened
10 months ago
0
RefGenomeService causes server tests to fail
#484
ubuntolog
closed
10 months ago
0
GSvar: display a message in GSvar when the server version changes
#483
ubuntolog
closed
10 months ago
0
Mac OS CI is broken due to python installation
#482
ubuntolog
closed
10 months ago
1
After deploying a new server, GSvar fails to renew user credentials
#481
ubuntolog
closed
10 months ago
0
Poor performance in VersatileFile.readline
#480
ubuntolog
opened
10 months ago
0
convert legacy data to masked GRCh38
#479
marc-sturm
opened
10 months ago
1
GSvar run tab: show columns processing modus and batch number to sample overview table (lab columns)
#478
marc-sturm
closed
10 months ago
0
ClinVar fails to get proxy settings on the server
#477
ubuntolog
closed
10 months ago
0
Add response codes to HttpHandler
#476
ubuntolog
closed
9 months ago
0
Report server version change to the clients
#475
ubuntolog
closed
10 months ago
0
Print all environment variables in server log when it starts
#474
ubuntolog
closed
10 months ago
0
NovaSeq X SampleSheet
#473
leonschuetz
closed
10 months ago
0
Burden test
#472
leonschuetz
closed
10 months ago
0
germline report: add table with remaining gaps after closing gaps
#470
marc-sturm
closed
10 months ago
0
Add Study in processed sample widget cannot be aborted
#469
Ott-Alexander
opened
11 months ago
0
Trimmed base percentage not correct for long read alignments
#468
jakobmatthes
opened
11 months ago
1
GSvarServer log rotation
#467
ubuntolog
opened
11 months ago
0
GSvarServer gets restarted unexpectedly
#466
ubuntolog
closed
10 months ago
0
Include OncoTree in disease details
#465
Ott-Alexander
closed
9 months ago
0
Enhance logging for server debugging
#464
ubuntolog
closed
10 months ago
0
NGSD: add "processing modus" to "processed sample" table
#463
marc-sturm
closed
10 months ago
1
VcfFile: complete refactoring (less code, less memory consumption)
#462
marc-sturm
closed
11 months ago
0
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