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imgag
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ngs-bits
Short-read sequencing tools
MIT License
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Bug: GSvar crashes on opening IGV of multisample
#565
leonschuetz
opened
17 hours ago
0
VcfAnnotateConsequence: Added support for RefSeq
#564
marc-sturm
closed
4 days ago
0
NGSDMaintain: move to GSvar client
#563
marc-sturm
opened
2 weeks ago
0
Fixed GSvar path for secondary analysis
#562
leonschuetz
closed
2 weeks ago
0
Added an option to set separate proxy settings for connecting to external GSvar servers
#561
ubuntolog
closed
3 weeks ago
0
BedLowCoverage/BedHighCoverage: now using sweep algorithm as default
#560
marc-sturm
closed
3 weeks ago
0
ClinVar API update
#559
leonschuetz
closed
3 weeks ago
0
ExtractMethylationData
#558
leonschuetz
closed
3 weeks ago
0
Create a code to run a maintenance process on timer every minute
#557
ubuntolog
closed
3 weeks ago
0
GSvarServer: update SGE status
#556
marc-sturm
closed
1 week ago
1
Add a flag "use_proxy_for_gsvar_server" that will force the use of proxy from the settings
#555
ubuntolog
closed
3 weeks ago
0
Endpoint for getting processed sample hash from the server
#554
ubuntolog
closed
3 weeks ago
1
Somatic sv config
#553
Ott-Alexander
closed
1 month ago
0
PRS
#552
leonschuetz
closed
1 month ago
0
Process correctly all PathTypes on the server
#551
ubuntolog
closed
1 month ago
0
Updated import of REs into NGSD
#550
marc-sturm
closed
1 month ago
0
REs can now be part of the germline report
#549
marc-sturm
closed
1 month ago
0
src/GSvar/RepeatExpansionWidget.*: added support for Straglr
#548
leonschuetz
closed
1 month ago
0
Fix contamination detection in MappingQC
#547
leonschuetz
closed
1 month ago
0
NovaSeqX: Add flag for processed samples which will be re-sequenced
#546
leonschuetz
closed
3 weeks ago
0
Confirm that the instructions for building ngs-bits from sources (Linux/MacOS) still works
#545
luskx016
closed
1 month ago
2
Switching from text files to Sqlite database for storing session information
#544
ubuntolog
closed
2 months ago
0
Transition to Sqlite for storing session information
#543
ubuntolog
closed
1 month ago
0
REPEAT_EXPANSIONS is missing from PathTypes in NGSD
#542
ubuntolog
closed
2 months ago
1
lrGS extension
#541
leonschuetz
closed
2 months ago
0
GSvar: speed-up edit widget of processed sample
#540
marc-sturm
closed
3 weeks ago
0
Server log rotation does not work in production
#539
ubuntolog
closed
1 month ago
0
EC2 instance console output monitoring
#538
ubuntolog
closed
1 week ago
1
Error handling for Celery task chains
#537
ubuntolog
opened
3 months ago
0
get sample sender from GenLab
#536
marc-sturm
opened
3 months ago
0
GSvar: create filter set for CNVs in LR samples
#535
leonschuetz
closed
2 months ago
0
GSvar: load default filter based on processing system
#534
leonschuetz
opened
3 months ago
0
GSvar - PS tab: add samples with same patient ID to related samples table
#533
marc-sturm
closed
1 week ago
0
KASP: add last update date and user
#532
marc-sturm
closed
1 week ago
0
GSvar: added sequencing platform and read length to technical report
#531
marc-sturm
closed
3 months ago
1
sample search: add samples with variants only
#530
marc-sturm
closed
3 months ago
1
GSVar: Make `KeepFastq` of NovaSeqX SampleSheet export configurable in settings
#529
BeneKenobi
closed
2 months ago
2
update ClinVar API
#528
marc-sturm
opened
4 months ago
1
MappingQC error related to FASTA index
#527
sjaenick
closed
4 months ago
1
Make use of AWS Route53 API to create subdomains for new customers
#526
ubuntolog
closed
3 months ago
0
Mac OS github build fails due to the Python update
#525
ubuntolog
closed
1 week ago
0
Compile Error - undefined reference to `curl_easy_getinfo@CURL_OPENSSL_4’
#524
HandsYe
closed
4 months ago
3
longread trio/multi
#523
leonschuetz
closed
4 months ago
0
GSvar: multi-sample report
#522
marc-sturm
opened
4 months ago
0
LongReads: add long-read support for SampleGender and GSvar
#521
leonschuetz
closed
5 months ago
1
Upload API for read data
#520
ubuntolog
opened
5 months ago
0
Working demo of megSAP on AWS
#519
ubuntolog
opened
5 months ago
0
Make a decision on subdomains for individual instances of GSvarServer for organizations
#518
ubuntolog
closed
4 months ago
0
Add dialog showing interpretability of target region
#517
marc-sturm
opened
5 months ago
0
Improves backup file handling for URLs and sessions
#516
ubuntolog
closed
5 months ago
0
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