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immunomind
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immunarch
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
https://immunarch.com
Apache License 2.0
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RepLoad select() error
#368
annabellaidler
opened
1 year ago
1
Error loading Mixcr v4.3.2 data - [!] Warning: can't find a column with clonal counts
#367
ArteEfs
opened
1 year ago
2
Permanent error in loading 10x data
#365
beginner984
opened
1 year ago
2
<simpleError in select(., .col, IMMCOL$count): <text>:1:7: unexpected symbol 1: Using an ^>
#364
RichardYongLi
opened
1 year ago
1
immunarch repLoad immdata<-repLoad(file_path) Error in `df[, vec_names]`:
#363
yueli8
opened
1 year ago
4
repLoad question: Warning: found NAs in clonal counts. Setting them to 1's.
#362
JHYSiu
closed
1 year ago
2
dbLoad() cannot load
#361
KforKuma
opened
1 year ago
0
VDJ usage
#360
B10inform
opened
1 year ago
1
cloneset.stats (tcR)
#359
antoine4ucsd
opened
1 year ago
0
repLoad cannot read 10X cellranger-5.0.0 vdj result file
#358
februaryfang
opened
1 year ago
2
TRUST4 barcode file
#357
pyarahmadi
opened
1 year ago
0
Issue with Reconstructing Bcell clonal lineages
#356
JLimen
opened
1 year ago
2
repLoad cannot read 10X single-cell TCR-seq data
#355
dzhaobio
opened
1 year ago
3
Creating metadata file for multiple hashed samples
#354
learning-MD
opened
1 year ago
2
issue with repOverlap()
#353
jic115
opened
1 year ago
0
repLoad problem: error in dyn.load
#352
WesAbplanalp
opened
1 year ago
1
repload error with TRUST4 data
#351
albyrne0815
opened
1 year ago
1
mixcr of single cell data
#350
laurie-tonon
opened
1 year ago
1
Assigning and grouping by characteristics
#349
zoqaiyum
opened
1 year ago
0
Clonotype indices.
#348
Ta-Shch
opened
1 year ago
1
Spectrotype plot
#347
makarov-ccf
opened
1 year ago
0
Track clonotypes plot
#346
makarov-ccf
opened
1 year ago
0
Immunarch is not loading onto my macOS RStudio
#345
zoqaiyum
closed
1 year ago
0
Added visualization for Gini coefficient; cleaned up vis.R to reduce copy-pasted values and code
#343
Alexander230
opened
1 year ago
0
Compatibility with Cellranger 5.x data no cdr1
#342
hjc0818
opened
1 year ago
1
Add missing `vis.immunr_gini`
#341
pwwang
opened
1 year ago
0
Old 2.1.5 MixCR version format unsupported
#340
KevinMaroney
closed
1 year ago
4
Downsampling
#339
github-wow
opened
1 year ago
0
A typo in ?immunarch::repSample
#338
github-wow
closed
1 year ago
1
The dot-dot notation (`..p.adj..`) was deprecated in ggplot2 3.4.0.
#337
github-wow
opened
1 year ago
2
Can immunarch 0.9.0 repLoad() .gz archives?
#336
github-wow
closed
1 year ago
2
immunarch 0.6.7 instead of 0.9.0 is installed from CRAN
#335
github-wow
closed
1 year ago
2
issue with repDiversity
#334
Ahmedalaraby20
opened
1 year ago
1
Immunarch 0.9.0 release
#333
Alexander230
closed
1 year ago
0
repClonalFamily does not generate expected columns
#332
mknewline
closed
1 year ago
2
seq.default error when loading custom data
#331
HyprValent
opened
1 year ago
0
Error in repAlignLineage()
#330
Jacktpk
closed
1 year ago
2
Collapse suspect duplicate clonotypes into one
#329
ms3389
opened
1 year ago
0
BCR pipeline tutorial update
#328
Alexander230
closed
1 year ago
0
MiXCR fails if only bestXGene columns are present
#327
fabio-t
opened
1 year ago
0
Support for BCR columns in new formats
#326
Alexander230
closed
1 year ago
0
Tests for repClonalFamily() and repSomaticHypermutation()
#325
Alexander230
closed
1 year ago
0
No generate.kmer function & get.kmers and getKmers do the same thing
#324
JMRegan
opened
1 year ago
0
How to split 10x genomics merged CSV by metadata
#323
amufaamo
opened
2 years ago
1
10x filt_contigs fix
#322
Alexander230
closed
1 year ago
0
Missing mandatory FR1.nt column in sample
#321
Hao961004
opened
2 years ago
14
Error in `select()`: ! <text>:1:7: unexpected symbol 1: Using an
#320
Biojenifer
opened
2 years ago
2
repAlignLineage tests
#319
Alexander230
closed
2 years ago
0
MiXCR format update
#318
Alexander230
closed
2 years ago
0
repDiversity bugfixes
#317
Alexander230
closed
2 years ago
0
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