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iqbal-lab-org
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gramtools
Genome inference from a population reference graph
MIT License
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std::bad_alloc error on machine with plenty of spare RAM
#122
iqbal-lab
closed
6 years ago
10
quasimap Assertion `index_end_boundary >= allele_coverage_offset' failed
#121
martinghunt
closed
6 years ago
5
simplified readme
#120
ffranr
closed
6 years ago
0
pip error when installing on Oxford servers
#119
iqbal-lab
closed
6 years ago
2
Travis build log exceeds 4Mb; forced stop
#118
ffranr
closed
6 years ago
1
Benchmarking Plasmodium: build and quasimap
#117
iqbal-lab
closed
4 years ago
4
Quasimap parameter `--run-directory` should be changed to `--output-directory`
#116
ffranr
closed
6 years ago
2
Document gramtools quasimap output files
#115
ffranr
closed
6 years ago
2
Change default kmer size to 5
#114
ffranr
closed
6 years ago
1
Something funny with kmer indexing Pf
#113
iqbal-lab
closed
6 years ago
6
kmer-size consistency between build and quasimap
#112
martinghunt
closed
6 years ago
2
Rename kmer size parameter
#111
ffranr
closed
6 years ago
2
Big memory usage on small VCF
#110
martinghunt
closed
6 years ago
10
Gramtools should exit with error if subprocess fails
#109
ffranr
closed
6 years ago
1
Illegal instruction crash during build
#108
iqbal-lab
closed
2 years ago
19
Per base coverage missing when allele size greater than read length
#107
ffranr
closed
6 years ago
0
Consider storing per-base coverage info in uint16_t
#106
iqbal-lab
closed
6 years ago
3
Add genotyper
#105
martinghunt
closed
6 years ago
0
Fails with uninformative error at start of build
#104
iqbal-lab
closed
6 years ago
15
Build continues when no variants are found
#103
ffranr
closed
6 years ago
1
Perl script does not include VCF entry unless PASS is in specific column
#102
ffranr
closed
6 years ago
5
Release includes pre built backend binaries
#101
ffranr
opened
6 years ago
4
CMake ensures compiler handles C++17
#100
ffranr
closed
6 years ago
1
pip3 install => build.cpp:68:1: error: expected '}' at end of input
#99
tseemann
closed
6 years ago
4
Non-root could use pip3 --user install ?
#98
tseemann
closed
6 years ago
2
Optimize site marker mask memory use
#97
iqbal-lab
closed
3 years ago
2
Systematic decisions to ignore regions of the PRG
#96
iqbal-lab
opened
6 years ago
8
Build command optionally skips building PRG
#95
ffranr
closed
6 years ago
3
Infer command
#94
ffranr
closed
6 years ago
4
Filter reads based on mapped location/position
#93
ffranr
closed
6 years ago
6
Regression in allele combination count storage
#92
iqbal-lab
closed
6 years ago
24
gramtools version is a bit odd
#91
iqbal-lab
closed
6 years ago
1
Selecting mapping instance(s) for a read which maps to multiple positions
#90
ffranr
closed
6 years ago
12
Coverage information missing for reads which map exactly within a single allele
#89
ffranr
closed
6 years ago
4
Identify lower bound of CMake minimum version requierment
#88
ffranr
closed
6 years ago
1
Quasimapping fails with an instance of 'std::out_of_range'
#87
iqbal-lab
closed
6 years ago
5
Long pause prior to quasimapping
#86
iqbal-lab
closed
6 years ago
2
std::bad_alloc error on human PRG
#85
iqbal-lab
closed
6 years ago
8
Add gramtools python module __version__
#84
ffranr
closed
6 years ago
1
quasimap: allow >=1 reads file(s) as input
#83
martinghunt
closed
6 years ago
1
Install failure using pip3
#82
iqbal-lab
closed
6 years ago
25
quasimap: report detailed allele coverage info
#81
martinghunt
closed
6 years ago
5
PRG rewrite
#80
ffranr
closed
6 years ago
3
Vcf to linear prg perl fixes
#79
martinghunt
closed
6 years ago
0
fix gramtools version reporting
#78
ffranr
closed
6 years ago
0
Quasimap reverse compliment reads
#77
ffranr
closed
6 years ago
0
Code is too slow - can I have a 50000x speedup please?
#76
iqbal-lab
closed
6 years ago
5
Release 0.9 datasets
#75
iqbal-lab
closed
6 years ago
3
Release 0.5 datasets
#74
iqbal-lab
closed
6 years ago
4
Release 0.9 requirements
#73
iqbal-lab
closed
6 years ago
1
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