jianhong ChIPpeakAnno issues

jianhong / ChIPpeakAnno

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issues

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Number of Overlap Peaks

#44 zhangqc723 opened 4 days ago
1
anno gene in heatmap

#43 li1311139481 opened 1 week ago
4
promoter()

#42 hukai916 closed 6 days ago
0
opened in error

#41 joshua-theisen closed 3 months ago
0
minor fix to resolve the seqlevelsStyle() issue

#40 hukai916 closed 4 months ago
0
minor fixes for 3.36.0

#39 hukai916 closed 4 months ago
1
handle the biofilecache error

#38 hukai916 closed 5 months ago
0
update vignettes, summarizePatternInPeaks, bump to 3.38.1, etc.

#37 hukai916 closed 6 months ago
0
Regarding oligoSummary()

#36 hukai916 closed 6 days ago
1
makeVennDiagram produces undesired console output

#35 drighelli closed 8 months ago
6
hello，I don't know how to deal with it，can you help me figure it out. thanks

#34 Rachel12138 opened 10 months ago
8
Devel

#33 JunhuiLi1017 closed 7 months ago
2
update doc of annotatePeakInBath

#32 hukai916 closed 11 months ago
1
Handle edge cases

#31 hukai916 closed 1 year ago
2
cvglists rtracklayer import error: Error in stop_if_wrong_length(what, ans_len) 'ranges' must have the length of the object to construct

#30 c2b2pss opened 1 year ago
4
Minor changes

#29 hukai916 closed 1 year ago
0
makeVennDiagram fails with error 'Unexpected parameter length for "col"'

#28 joshua-theisen closed 1 year ago
4
oligoSummary not populating the motif matrix output field

#27 jesswhitts closed 1 year ago
2
How to set the circle size same proportion of the number of peaks when there are more than 2 sets using `makeVennDiagram`?

#26 danli349 closed 1 year ago
5
`findOverlapsOfPeaks(gr1, gr2)` Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs.

#25 danli349 opened 1 year ago
6
Revert "oligoNucleotideEnrichment function is added for oligoNucleotide enric…"

#24 jianhong closed 1 year ago
0
oligoNucleotideEnrichment function is added for oligoNucleotide enric…

#23 JunhuiLi1017 closed 1 year ago
0
How to understand otherExon

#22 lbwfff opened 1 year ago
7
disjointExons removed in Bioconductor 3.17

#21 yeyuan98 closed 1 year ago
1
Add CSV support toGRanges

#20 hukai916 closed 1 year ago
0
use 'entrez_id' instead of 'EntrezID' for getEnrichedPATH() output

#19 hukai916 closed 1 year ago
0
Differences between bedtools overlap / findOverlaps and findOverlapsOfPeaks

#18 csijcs opened 2 years ago
10
toGRanges() can't read in file name

#17 hukai916 closed 2 years ago
1
error in enrichmentPlot() when providing a partially empty GO object

#16 spribitzer closed 2 years ago
1
Questions on the how genomicElementDistribution works

#15 Kyung-TaeLee opened 2 years ago
1
toGRanges() no longer working in response to UCSC update

#14 jardplard closed 3 years ago
3
Error with `bindingType` in `annotatePeakInBatch`

#13 rbenel opened 3 years ago
2
add documentation for getAnnotation() function

#12 hukai916 closed 3 years ago
0
genomicElementDistribution not found

#11 Hemantcnaik opened 3 years ago
5
invalid class "CompressedGRangesList" object

#10 GBeattie opened 3 years ago
1
save featureAlignedHeatmap output to picture file ?

#9 jupollet opened 3 years ago
2
Annotation for dm6 does not contain gene_name

#8 ashleymaeconard closed 3 years ago
2
genomicElementDistribution

#7 GerardoZA opened 3 years ago
1
Bug in makeVennDiagram.R

#6 adamd3 closed 3 years ago
1
Bug in annotatePeakInBatch (fix found): invalid class "DFrame" object: column names should not be NULL

#5 millerh1 closed 3 years ago
3
assignChromosomeRegion

#4 mick42-star closed 3 years ago
1
overlapofpeak issue

#3 GerardoZA closed 4 years ago
2
getAllPeakSequence() incongrous length between seq and myPeakList

#2 millerh1 closed 4 years ago
1
findOverlapsOfPeaks error: Inputs contain duplicated ranges

#1 AdrijaK closed 4 years ago
1