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jingwyang / AnceTran

AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data
https://github.com/jingwyang/AnceTran
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ancestral-inference character-tree-building chip-seq distance-estimation rna-seq transcriptome

readme

title: "README" author: "Jingw Yang" date: "2018/01/30" output: md_document

AnceTran

:smile:

AnceTran is an R package that performs analyses of transcriptome evolution based on RNA-seq expression data or ChIP-seq TF binding data, including optimized input formatting, normalization and pair-wise distance evaluation, transcriptome character tree construction and ancestral transcriptome state inference.

AnceTran package is under active developing, current developing version 2.0 is available at https://github.com/jingwyang/AnceTran.

A convenient way to install package from github is through devtools package:

install.packages('devtools')
devtools::install_github("jingwyang/AnceTran")

Users can also download AnceTran package and install locally through:

install.packages("filePath/AnceTran.2.0.tar.gz", repos = NUll, type = "source")