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jorainer
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ensembldb
This is the ensembldb development repository.
https://jorainer.github.io/ensembldb
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using EnsDb on sqlite file crash further RMariaDB connections
#107
kforner
opened
3 years ago
3
No CDS found (proteinToGenome)
#106
Zupanova
opened
3 years ago
5
Cannot find function transcriptToGenome
#105
ahdee
closed
4 years ago
2
mapIds() should fail when keys are invalid
#104
mtmorgan
closed
4 years ago
3
Inclusion of GC content?
#103
smped
closed
4 years ago
6
getting the mouse transcript sequence by ensembldb
#102
Ci-TJ
closed
4 years ago
10
..
#101
Ci-TJ
closed
4 years ago
0
mapIds(..., multiVal="asNA") returns logical() instead of character() when all ids map multiply
#100
mtmorgan
opened
4 years ago
6
Build a human hg38 EnsDb of an older Ensembl release (v79)
#99
ccwang002
closed
5 years ago
3
Building the DB from prefetched txt files
#98
harish0201
opened
5 years ago
5
Problem with ensDbFromGff using recent ensembl gff files
#97
stephenrong
opened
5 years ago
17
Just a test - delete me
#96
ghost
closed
5 years ago
0
Switch from FaFiles to TwobitFiles
#95
jorainer
closed
5 years ago
0
Add intronsByTranscript method
#94
jorainer
closed
5 years ago
0
Error when converting from genomic to transcriptomic coordinates
#93
marcasriv
closed
5 years ago
4
Improve performance of mapping functions
#92
jorainer
closed
5 years ago
7
compare mapping functions with GenomicFeatures::mapFromTranscripts
#91
jorainer
closed
5 years ago
2
Discrepancy between UCSC/NCBI and ensembldb in genome to transcript mapping
#90
jorainer
closed
5 years ago
1
Include transcript/protein version in the database
#89
ccwang002
closed
5 years ago
8
Provide mapping of non standard chromosome names from ensembl to UCSC
#88
ivanek
opened
5 years ago
6
implement mapIds(multiVals = "CharacterList")
#87
mtmorgan
closed
5 years ago
2
Not picking up circular DNA correctly
#86
jorainer
opened
5 years ago
3
transcriptToGenome problem
#85
smaegol
closed
5 years ago
4
local MySQL installation error
#84
shwong-tw
closed
1 year ago
6
Improve MySQL performance
#83
jorainer
closed
5 years ago
0
Switch from RMySQL to RMariaDB
#82
jorainer
closed
5 years ago
0
genomeToTranscript function not found
#81
pamelarussell
closed
5 years ago
2
Get the amoniacid name for each positition
#80
Tato14
closed
6 years ago
5
Fix Rd warnings on Windows build machine
#79
jorainer
closed
6 years ago
0
Add a filter for the protein_domain_source
#78
jorainer
closed
6 years ago
0
Add mapping of transcripts to NCBI RefSeq
#77
jorainer
opened
6 years ago
6
fix for issue #75
#76
plijnzaad
closed
6 years ago
1
ensDbFromGtf refuses to parse GTF file
#75
plijnzaad
closed
6 years ago
7
Unit test failure in extractTranscriptSeqs
#74
jorainer
closed
6 years ago
1
Implement a function to map from cds-relative to tx-relative coordinates
#73
jorainer
closed
6 years ago
2
Error creating EnsDb from Mmusculus v67 GTF
#72
jorainer
closed
6 years ago
1
Get the Swissprot IDs
#71
jorainer
closed
6 years ago
4
Rsamtools does no longer export method path
#70
jorainer
closed
6 years ago
0
Some Granges with genomeToProtein: "Error: subscript contains NAs"
#69
ibwoo
closed
6 years ago
3
Report mapped genomic coordinates in HGVS notation
#68
jorainer
opened
6 years ago
0
genomeToProtein not working on GRanges object with >1 range
#67
ibwoo
closed
6 years ago
4
heavyweight dependencies
#66
lawremi
closed
6 years ago
5
Add/fix the proteinToGenome function
#65
jorainer
closed
6 years ago
0
Add transcriptToGenome function
#64
jorainer
closed
6 years ago
1
Missing GenomeInfoDbData
#63
mjsteinbaugh
closed
6 years ago
5
Update the coordinate-mapping vignette
#62
jorainer
closed
6 years ago
0
Add a genomeToTranscript function
#61
jorainer
closed
6 years ago
1
Add a transcriptToGenome function
#60
jorainer
closed
6 years ago
1
Add a genomeToProtein function
#59
jorainer
closed
6 years ago
0
Add a proteinToTranscript function
#58
jorainer
closed
6 years ago
2
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