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juaml
/
junifer
Forschungszentrum Jülich Neuroimaging Feature Extractor
https://juaml.github.io/junifer
GNU Affero General Public License v3.0
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Improve external dependency handling of `PipelineStepMixin`
#311
synchon
closed
5 months ago
3
[ENH]: Improve `BasePreprocessor`
#310
synchon
closed
5 months ago
10
[ENH]: Introduce `QueueContextAdapter` and `HTCondorAdapter`
#309
synchon
closed
6 months ago
1
[ENH]: Improving DataGrabber `patterns`
#308
synchon
closed
5 months ago
2
[ENH]: Allow for `local` queue using GNU parallel
#306
fraimondo
closed
5 months ago
3
chore(deps): bump codecov/codecov-action from 3 to 4
#305
dependabot[bot]
closed
7 months ago
1
chore(deps): bump actions/checkout from 3 to 4
#304
dependabot[bot]
closed
7 months ago
1
chore(deps): bump actions/setup-python from 4 to 5
#303
dependabot[bot]
closed
7 months ago
0
[ENH]: Allow `BOLDWarper` to warp between MNI spaces
#302
synchon
closed
6 months ago
2
[ENH]: Preprocessing step to warp any image to any standard space
#301
fraimondo
closed
5 months ago
14
[MAINT]: Improve repository
#300
synchon
closed
7 months ago
3
[ENH]: Add support for on-the-fly template space transformation
#299
synchon
closed
5 months ago
5
[ENH]: Introduce `get_template` for getting templates
#298
synchon
closed
7 months ago
3
[ENH]: Introduce `get_xfm` for fetching transformation files
#297
synchon
closed
7 months ago
2
[ENH]: Validate boolean parameters passed from yaml file
#296
tomug
opened
7 months ago
0
[ENH]: Introduce `run_ext_cmd` for running external commands
#295
synchon
closed
7 months ago
2
[MAINT]: Update README and pyproject.toml
#294
synchon
closed
7 months ago
2
[ENH]: Introduce `_AntsApplyTransformsWarper`
#293
synchon
closed
7 months ago
2
[MAINT]: Revert #286
#292
synchon
opened
8 months ago
0
update: correct register_mask import in code example
#291
tomug
closed
8 months ago
2
[DOC]: Update "Adding Masks" example code
#290
tomug
closed
8 months ago
1
[BUG]: FunctionalConnectivityBase not included in markers/__init__.py
#289
tomug
closed
8 months ago
3
[MAINT]: Make `BOLDWarper` tool-agnostic
#288
synchon
closed
8 months ago
2
[ENH]: Add `mode` as an aggregation function for `get_aggfunc_by_name`
#287
synchon
closed
7 months ago
2
[BUG]: Correct path propagation logic for `ReHoEstimator` and `ALFFEstimator`
#286
synchon
closed
8 months ago
5
[ENH]: Support parcel aggregation with eigenvariate
#285
tomug
opened
8 months ago
0
[BUG]: Mask "inherit" will be warped twice if working in native space.
#284
fraimondo
closed
7 months ago
2
[BUG]: WorkDirManager does not accept string as workdir
#283
fraimondo
closed
8 months ago
4
[BUG]: Propagate ReHo and fALFF maps' file paths
#282
synchon
closed
9 months ago
2
[BUG]: Replace FSL `std2imgcoord` with `img2imgcoord`
#281
synchon
closed
9 months ago
2
[BUG]: Fix FSL `std2imgcoord` source image
#280
synchon
closed
9 months ago
2
[ENH]: Use stderr for external tool wrappers' output
#279
synchon
closed
9 months ago
2
[BUG]: Fix FSL `std2imgcoord` I/O
#278
synchon
closed
9 months ago
4
[ENH]: Add support for ANTs via Docker
#277
synchon
closed
9 months ago
2
[BUG]: Fix interpolation scheme for native parcellation and mask
#276
synchon
closed
9 months ago
2
[ENH]: Support Brainnetome 246 parcellation
#275
synchon
closed
6 months ago
2
[FIX]: Make native warped components persist
#274
synchon
closed
10 months ago
2
[ENH]: Specify which shell to use when using `junifer queue`
#273
LeSasse
closed
5 months ago
9
[FIX]: Fix `_check_fsl()`
#272
synchon
closed
10 months ago
2
[ENH]: Add DMCC13Benchmark DataGrabber
#271
synchon
closed
10 months ago
2
[MAINT]: Add support for Python 3.12
#270
synchon
closed
5 months ago
2
[MAINT]: Improve docs, packaging and code style
#269
synchon
closed
10 months ago
2
[ENH]: Add space awareness to existing components
#268
synchon
closed
10 months ago
8
[ENH]: Introduce `BOLDWarper`
#267
synchon
closed
10 months ago
2
[ENH]: Introduce `_ApplyWarper`
#266
synchon
closed
10 months ago
2
[ENH]: Introduce `junifer.data.get_coordinates()`
#265
synchon
closed
10 months ago
2
[ENH]: Introduce `junifer.data.get_parcellation()`
#264
synchon
closed
10 months ago
2
[ENH]: Add support for multiple preprocessors in the pipeline
#263
synchon
closed
10 months ago
2
[ENH]: Add support for FSL via Docker
#262
synchon
closed
10 months ago
2
[MAINT]: Pin `ruff` and update housekeeping configs
#261
synchon
closed
10 months ago
2
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