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junseonghwan
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PhylEx
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Resolve issue where boost is compiled with old version of gcc.
#28
junseonghwan
closed
1 year ago
1
Segmentation fault on some input data
#27
junseonghwan
opened
1 year ago
0
Output cell assignment
#26
junseonghwan
opened
1 year ago
0
Create a separate module for performing copy number inference.
#25
junseonghwan
opened
3 years ago
1
Implement max-product/sum-product algorithm for the Markov model structure for CN estimation
#24
junseonghwan
opened
3 years ago
0
Accept gexpr matrix as an (optional) input
#23
junseonghwan
opened
3 years ago
1
Add a feature to continue from previous run
#22
junseonghwan
opened
3 years ago
0
Single cell data input
#21
junseonghwan
opened
3 years ago
0
dropout probability is replaced by fixed value of 0.5
#20
toyo97
opened
3 years ago
0
17 data input
#19
junseonghwan
closed
3 years ago
0
12 root node representation
#18
junseonghwan
closed
3 years ago
0
Data input should not include chr and pos columns.
#17
junseonghwan
closed
3 years ago
2
Check and test bulk data generation process.
#16
junseonghwan
opened
3 years ago
0
Parallel tempering and simulated annealing.
#15
junseonghwan
opened
3 years ago
0
Create common ancestor clone
#14
junseonghwan
closed
3 years ago
1
Test prior assignment probability.
#13
junseonghwan
closed
3 years ago
2
Root node to represent ancestral cancer clone.
#12
junseonghwan
closed
3 years ago
1
GSL random to use taus. Fixed stick re-ordering code.
#11
junseonghwan
closed
3 years ago
0
Implement new mixture for single cell likelihood
#10
junseonghwan
closed
3 years ago
1
Bug in the stick reordering.
#9
junseonghwan
closed
3 years ago
0
7 parallel processing
#8
junseonghwan
closed
4 years ago
0
Add parallel processing.
#7
junseonghwan
opened
4 years ago
1
5 handle large snvs
#6
junseonghwan
closed
4 years ago
0
Handle large number of SNVs.
#5
junseonghwan
closed
4 years ago
6
Merge CloneTreeNodeParam into CloneTreeNode.
#4
junseonghwan
opened
4 years ago
0
2 multi region sampling
#3
junseonghwan
closed
4 years ago
0
Multi-region sampling
#2
junseonghwan
closed
4 years ago
0
Eliminate templates.
#1
junseonghwan
closed
4 years ago
1