kausmees GenoCAE issues

kausmees / GenoCAE

Convolutional autoencoder for genotype data

BSD 3-Clause "New" or "Revised" License

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issues

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Error while building docker container

#36 SunProg opened 2 years ago
0
Extracting feature importance

#35 bschilder opened 2 years ago
0
Projecting non-population metadata

#34 bschilder closed 2 years ago
6
`2022-06-23 09:25:59.298713: W tensorflow/core/framework/cpu_allocator_impl.cc:82] Allocation of 19113388800 exceeds 10% of free system memory.`

#33 bschilder closed 2 years ago
3
Docker building error due to python requirements

#32 bschilder opened 2 years ago
1
evaluate with superpops: how is the average calculated?

#31 richelbilderbeek closed 2 years ago
2
Fix 'check.yaml', fix #26

#30 richelbilderbeek closed 2 years ago
1
Fix reference to article

#29 richelbilderbeek closed 2 years ago
0
Build docker

#28 richelbilderbeek closed 2 years ago
0
Docker script does not build anymore?

#27 richelbilderbeek closed 2 years ago
4
GenoCAE build fails due to upstream update

#26 richelbilderbeek closed 2 years ago
1
Request: add a toy model setup

#25 richelbilderbeek closed 2 years ago
3
Use 'evaluate' without the `HO_superpopulation` file

#24 richelbilderbeek closed 2 years ago
6
Use 'project' without a 'HO_superpopulation' file

#23 richelbilderbeek closed 2 years ago
4
GCAE gives error when running 'project' with a phenotype

#22 richelbilderbeek closed 2 years ago
14
GCAE cannot run 'project' with a phenotype, how to fix?

#21 richelbilderbeek closed 2 years ago
1
Could AasaJohanssonUU be added as a Collaborator?

#20 richelbilderbeek closed 2 years ago
3
What is the cause for 'ValueError: Dimensions must be equal'?

#19 richelbilderbeek closed 2 years ago
3
Idea: use Swish instead of ELU?

#18 richelbilderbeek closed 3 years ago
1
Suggest: improve CLI error messages

#17 richelbilderbeek opened 3 years ago
1
Conversion to PLINK format failed for .bed file

#16 richelbilderbeek closed 3 years ago
3
Convert EIGENSTRAT files to PLINK format

#15 richelbilderbeek closed 3 years ago
5
Fix 'text files are not executable', #12

#14 richelbilderbeek closed 3 years ago
0
Suggest + volunteer: rename HumanOrigins249_tiny.eigenstratgeno to HumanOrigins249_tiny.bed

#13 richelbilderbeek closed 3 years ago
2
Suggest + volunteer: text files are not executable

#12 richelbilderbeek closed 3 years ago
4
Suggest + volunteer: rename HumanOrigins249_tiny.snp to HumanOrigins249_tiny.bim

#11 richelbilderbeek closed 3 years ago
4
Suggest: allow to work with GenoCAE without changing the working directory

#10 richelbilderbeek closed 3 years ago
2
Suggest: shorter error message when --datadir is not found

#9 richelbilderbeek opened 3 years ago
0
Add CI

#8 richelbilderbeek closed 3 years ago
0
Suggest: give an error message when an invalid CLI argument is given

#7 richelbilderbeek closed 3 years ago
1
Suggest: release a version

#6 richelbilderbeek closed 3 years ago
1
Suggest + volunteer: add CONTRIBUTING.md

#5 richelbilderbeek opened 3 years ago
0
Suggest + volunteer: add GitHub Actions continuous integration

#4 richelbilderbeek closed 3 years ago
2
Add Docker support

#3 nanguoyu closed 3 years ago
3
Add reference, fix #1

#2 richelbilderbeek closed 3 years ago
0
Suggest: cite paper

#1 richelbilderbeek closed 3 years ago
2