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kdahlquist
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GRNmap
Gene Regulatory Network modeling and parameter estimation
BSD 3-Clause "New" or "Revised" License
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Beta
#371
im-deepfriedwater
closed
6 years ago
0
Access to UH 2752 computer lab
#370
bengfitzpatrick
closed
6 years ago
0
Added More Test Cases for computeStatistics
#369
im-deepfriedwater
closed
6 years ago
0
Look for property-based testing package in Matlab
#368
dondi
opened
6 years ago
0
fixed bug in computeStatistics and finished computeStatisticsTest
#367
im-deepfriedwater
closed
6 years ago
1
added avg values for missingOnedatapoint
#366
im-deepfriedwater
closed
6 years ago
0
calculating standard deviations
#365
azinge
closed
6 years ago
0
revised test cases for missing data points in computeStatisticsTest
#364
im-deepfriedwater
closed
6 years ago
0
finishing missing no data tests
#363
azinge
closed
6 years ago
0
Coding Team Should Present at SCCUR 11/18/17
#362
kdahlquist
closed
6 years ago
15
Test files Audit
#361
kdahlquist
closed
6 years ago
35
Look into AIC curves and alternative L-curve plots to compare and evaluate different sized networks
#360
kdahlquist
opened
6 years ago
1
Task list for Coding team Fall 2017
#359
kdahlquist
closed
6 years ago
18
Updating with results of meeting
#358
azinge
closed
6 years ago
0
Honors Thesis Abstract Due Sept. 30
#357
kdahlquist
closed
6 years ago
7
Running late
#356
bengfitzpatrick
closed
6 years ago
1
Preliminary Work for Refactoring Avg, Stdev, and minLSE
#355
im-deepfriedwater
closed
6 years ago
0
Data Analysis Team Tasks for Week of 8/30/17
#354
kdahlquist
closed
6 years ago
1
minLSE is not being computed when data contains missing values
#353
kdahlquist
closed
6 years ago
12
Sigmas are not being calculated for genes/times with missing values
#352
kdahlquist
closed
6 years ago
3
L-curve analysis with varied network sizes, optimization parameters, data
#351
kdahlquist
closed
5 years ago
10
Double-check sixteen_tests Excel files for precision error we had with timepoint 1.2
#350
kdahlquist
closed
5 years ago
1
Refactored names of data in GRNstruct
#349
trixr4kdz
closed
7 years ago
0
microData -> expressionData refactor
#348
im-deepfriedwater
closed
7 years ago
3
Changed 'SSE' into 'MSE'
#347
trixr4kdz
closed
7 years ago
0
Updating kdahlquist/beta
#346
trixr4kdz
closed
7 years ago
0
Scheduling GRNmap meetings for Fall 2017
#345
kdahlquist
closed
6 years ago
11
Compute Gephi stats "by hand" to verify we know how they are computed
#344
kdahlquist
closed
5 years ago
14
Data Analysis Team tasks for the rest of the semester
#343
kdahlquist
closed
6 years ago
17
Update Publications, News, and People pages
#342
kdahlquist
opened
7 years ago
12
Added URS 2017 poster
#341
trixr4kdz
closed
7 years ago
0
GRNmap coding meeting on 3/15 will be in LSB 330 classroom instead of 331
#340
kdahlquist
closed
7 years ago
0
Added more tests for gLSE
#339
trixr4kdz
closed
7 years ago
0
Beta
#338
im-deepfriedwater
closed
7 years ago
0
Added another test to gLSETest
#337
trixr4kdz
closed
7 years ago
0
Organize data directory on Dahlquist Lab repository; use README.md to make table of contents
#336
kdahlquist
closed
7 years ago
4
Write protocol for generating graph statistics with Gephi
#335
kdahlquist
closed
7 years ago
5
Automate creation of artificial datasets for testing purposes
#334
kdahlquist
opened
7 years ago
0
Cleaned up the test suite
#333
trixr4kdz
closed
7 years ago
0
Create GenMAPP gex file to show node coloring
#332
kdahlquist
closed
6 years ago
2
Analyze distance matrix for db5 network
#331
kdahlquist
closed
7 years ago
1
Do a multiple regression to look for relationships between MSE, P , d, b, w, graph stats, etc.
#330
kdahlquist
closed
6 years ago
12
Compute weighted in-, out-, and total-degree for random derived networks
#329
kdahlquist
closed
7 years ago
2
Compute weighted in-, out-, and total-degree for db-derived networks
#328
kdahlquist
closed
7 years ago
6
Finish generating 30 random networks based on db5 and run GRNmap on them
#327
kdahlquist
closed
7 years ago
10
Analyze MSE's for db-derived and random networks
#326
kdahlquist
closed
7 years ago
9
Compute graph statistics for random networks with Gephi
#325
kdahlquist
closed
7 years ago
6
Data analysis team tasks for week of 2/16, 2/23, and 3/2
#324
kdahlquist
closed
7 years ago
9
Investigate differing results on different computers
#323
dondi
closed
6 years ago
12
Created test method signatures for gLSE
#322
trixr4kdz
closed
7 years ago
0
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