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kharchenkolab
/
pagoda2
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
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Error in extendedP2proc
#147
vixenk
closed
1 month ago
1
pagoda2WebApp_readStaticFile function does not work
#146
Auryllius
closed
1 month ago
4
'as_cholmod_sparse' not provided by package 'Matrix'
#145
IENAUMANN
closed
6 months ago
2
Application to bulk-seq data?
#144
hsiowa2
closed
8 months ago
1
Keep limits fix
#143
rrydbirk
closed
1 year ago
2
Mat::init(): requested size is too large; suggest to enable ARMA_64BIT_WORD
#142
wresch
closed
1 year ago
10
'mc.cores' > 1 is not supported on Windows
#141
cfz1998
closed
1 year ago
2
Report a small bug
#140
Junedays
closed
1 year ago
7
keep.limits triggers error in plotEmbedding
#139
teng-gao
closed
1 year ago
3
Updates for Matrix 1.4.2
#138
evanbiederstedt
closed
2 years ago
0
Error in hdea
#137
yojetsharma
closed
2 years ago
2
Extract pathway overdispersion data on a per cell basis
#136
chrisley90
closed
2 years ago
5
Error in extendedP2proc
#135
Dimmiso
closed
2 years ago
6
Error in extendedP2proc
#134
Wangxin555
closed
2 years ago
1
An error about running show.app in vignette
#133
rocketeer1998
closed
2 years ago
12
Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 0 (non-NA) cases
#132
Telogen
closed
2 years ago
1
Running Overdispersion Pathway Analysis
#131
airfan0
closed
2 years ago
2
installing problem
#130
ch8316f5eyu
closed
2 years ago
1
Trying to run Pagoda2 on Seurat pre-processed data
#129
airfan0
closed
2 years ago
3
Exporting lists of genesets within aspects
#128
BW093
closed
2 years ago
4
read10xMatrix error
#127
gengnomes
closed
2 years ago
5
testPathwayOverdispersion returns NA
#126
duocang
closed
2 years ago
4
Version 1.0.5
#125
evanbiederstedt
closed
3 years ago
0
Remove vignettes
#124
evanbiederstedt
closed
3 years ago
0
Could not find function "n2Knn"
#123
rrydbirk
closed
3 years ago
1
Error in extendedP2proc
#122
markdunning
closed
3 years ago
2
Unable to view genes associated with GO terms
#121
n1tian
closed
3 years ago
2
mc.cores >1 not supported on Windows
#120
markdunning
closed
3 years ago
2
batch
#119
b1lake
closed
3 years ago
5
Version 1.0.0 on CRAN
#118
evanbiederstedt
closed
3 years ago
0
Error in gzfile(file, mode) : cannot open the connection at testPathwayOverdispersion
#117
mzhibo
closed
3 years ago
2
read.10x.matrices() - Error with Cell Ranger v3.x data
#116
AmelZulji
closed
3 years ago
14
cannot change value of locked binding for 'counts'
#115
xiongyichun
closed
3 years ago
8
Version 1.0.0
#114
evanbiederstedt
closed
3 years ago
0
fac2col not found
#113
cstubben
closed
3 years ago
7
Use R6 class for Pagoda2 class
#112
evanbiederstedt
closed
3 years ago
0
Set openmp conditionals for #pragma omp
#111
evanbiederstedt
closed
3 years ago
0
adjustVariance "fatal error" in R
#110
haircell
closed
3 years ago
11
Version 0.1.3
#109
evanbiederstedt
closed
3 years ago
0
macOS CMD build error (installation issue)
#108
haircell
closed
3 years ago
12
Install on Windows
#107
evanbiederstedt
closed
3 years ago
1
use lambda expression in Hnsw::NormalizeVector
#106
evanbiederstedt
closed
4 years ago
0
Remove unused/outdated functions
#105
evanbiederstedt
closed
4 years ago
3
simply change axes from log10 to log, adjustVariance
#104
evanbiederstedt
closed
4 years ago
1
scale by log10(exp(1)) for log10 plots
#103
evanbiederstedt
closed
3 years ago
6
source code should use TRUE/FALSE
#102
evanbiederstedt
closed
4 years ago
0
clarifying log, log10
#101
evanbiederstedt
closed
4 years ago
2
remove mapply from factorListToMetadata
#100
evanbiederstedt
closed
3 years ago
3
remove test.stability, update documentation
#99
evanbiederstedt
closed
4 years ago
0
Bugfix, check list elements exist within serializeToStaticFast(), WriteListToBinary()
#98
evanbiederstedt
closed
4 years ago
2
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