khughitt EuPathDB issues

khughitt / EuPathDB

EuPathDB recipe for the Bioconductor AnnotationHub

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issues

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fixing some doofus

#42 abelew opened 11 months ago
0
Few minor fixes + instructions for creating and installing inside a conda env

#41 khughitt opened 11 months ago
0
some whitespace, moved to seq_along(), taxonomy fixes

#40 abelew closed 11 months ago
0
OrgDb datasets missing from recent AH versions?

#39 khughitt opened 1 year ago
1
How to download .sqlite file for all OrgDB in one go ?

#38 cparsania opened 1 year ago
0
Cannot find OrgDB objects from EuPathDb in AnnotationHub

#37 cparsania opened 1 year ago
0
Revise Vignette

#36 Rohit-Satyam opened 2 years ago
0
some old changes I neglected to submit

#35 abelew closed 1 year ago
0
started generating data and realized I was killing the eupathdb webservers

#34 abelew closed 3 years ago
0
EOFs sneaking into results from posting to the new webservices

#33 abelew opened 3 years ago
1
removed old column finder

#32 abelew closed 3 years ago
0
I think everything is clean

#31 abelew closed 3 years ago
0
this should be automatic now.

#30 abelew closed 3 years ago
0
some changes for v46

#29 abelew closed 3 years ago
0
Mostly changes to improve testing of completed data

#28 abelew closed 4 years ago
0
small changes to pick off KEGG ID mismatches.

#27 abelew closed 5 years ago
0
initial uniprot implementation

#26 abelew closed 5 years ago
0
rawr

#25 abelew closed 5 years ago
0
minor changes to make travis happy

#24 abelew closed 5 years ago
0
r cmd check

#23 abelew closed 5 years ago
1
I think this is now more error checking than work.

#22 abelew closed 5 years ago
0
better metadata checker

#21 abelew closed 5 years ago
1
Resolving https://support.bioconductor.org/p/121979/

#20 abelew closed 5 years ago
0
small makefile and description change.

#19 abelew closed 5 years ago
0
eupathdb.org version 44.

#18 abelew closed 5 years ago
1
An answer to: https://github.com/khughitt/EuPathDB/issues/9

#17 abelew closed 5 years ago
0
a larger change than intended

#16 abelew closed 5 years ago
1
uncertain steps toward handling new versions of AnnotationHubData and GenomeInfoDB

#15 abelew closed 5 years ago
0
Clearing shenanigans caused by matching against GenomeInfoDb.

#14 abelew closed 5 years ago
0
r cmd check passes without shenanigans, vignettes rebuild, tests pass.

#13 abelew closed 5 years ago
5
added makefile target for aws.

#12 abelew closed 5 years ago
0
The result of my email conversations with Lori

#11 abelew closed 5 years ago
0
Create README.md

#10 khughitt closed 5 years ago
0
Update OrgDb vignette

#9 khughitt opened 5 years ago
4
Update GRanges vignette

#8 khughitt opened 5 years ago
3
mostly small changes, metadata v42 in inst/extdata

#7 abelew closed 5 years ago
1
A bunch of changes to shake out oddities observed when creating fungidb packages.

#6 abelew closed 5 years ago
0
How to get current release (41) data of fugiDB through annotationhub

#5 cparsania closed 5 years ago
23
small changes and one annoying fix.

#4 abelew closed 5 years ago
0
make check/make test now pass on travis

#3 abelew closed 5 years ago
1
some minor redundancy removals

#2 abelew closed 5 years ago
1
merged the relevant hpgltools code and EuPathDB

#1 abelew closed 5 years ago
12