knights-lab analysis_SHOGUN issues - Githubissues

knights-lab / analysis_SHOGUN

Analysis scripts and code for reproducing the analysis for the SHOGUN paper

MIT License

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Random seeds to subsample

#18 FelipeMSD closed 1 year ago
2
compare to 16S sequencing profiles

#17 yejunbin opened 5 years ago
0
Pipelines to run benchmarks

#16 bhillmann closed 7 years ago
0
Add extra scripts

#15 bhillmann closed 7 years ago
0
HMP Samples

#14 bhillmann opened 7 years ago
0
Make a DB

#13 bhillmann opened 7 years ago
0
Nailing Down the Cost

#12 bhillmann closed 7 years ago
1
Single-strain community

#11 bhillmann opened 7 years ago
12
Compare BW aligners versus Smith-Waterman for best hits

#10 bhillmann opened 7 years ago
4
Ultra deep sequencing validation

#9 bhillmann opened 7 years ago
3
Clinical dataset validation

#8 bhillmann opened 7 years ago
8
Verify with Mock Communities

#7 bhillmann opened 7 years ago
2
Assess the ability to detect viruses

#6 bhillmann opened 7 years ago
7
Try Various Read Lengths

#5 bhillmann opened 7 years ago
0
Run comparisons to a variety of other tools for precision, recall, accuracy

#4 bhillmann opened 7 years ago
1
Necessary depth for detecting a species given minimum relative abundance

#3 bhillmann opened 7 years ago
2
Current checklist

#2 bhillmann closed 7 years ago
0
Semi-synthetic genome simulation

#1 bhillmann opened 7 years ago
0