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knowledgesystems
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pipelines-scrum
Repository for tracking uncategorizable issues related to backend pipelines work
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Resolve DevOps Issues
#1251
averyniceday
closed
3 months ago
0
Migrate Triage to RDS
#1250
averyniceday
closed
3 months ago
0
Shell Script import-tool for Jason Hwee
#1249
beguma1
closed
4 months ago
1
Debug failing DMP imports
#1248
beguma1
closed
4 months ago
1
Add ARCHER-SOLID-CV3 and V4 gene panel definitions to db
#1247
callachennault
closed
4 months ago
0
Missing Germline Events
#1246
averyniceday
closed
4 months ago
0
Address Archer import error for ARCHER-SOLID-CV4
#1245
callachennault
closed
4 months ago
0
Support MSK Access V2
#1244
beguma1
closed
4 months ago
0
Investigate missing germline issue for IMPACT breast and ovarian
#1243
beguma1
closed
4 months ago
0
Change SEQ_DATE format for Sophia
#1242
callachennault
closed
4 months ago
1
Missing Germline Mutation
#1241
averyniceday
closed
4 months ago
0
Address Archer import error for unknown gene panel
#1240
callachennault
closed
4 months ago
0
SO_COMMENTS formatting issue
#1239
callachennault
closed
4 months ago
2
Follow up with Chris about CDM Samples
#1238
averyniceday
closed
4 months ago
0
Keycloak Available and Used in V2 Account
#1237
averyniceday
closed
4 months ago
1
Snapshot and Migrate Keycloak DB from V0 to V2 Account
#1236
averyniceday
closed
4 months ago
0
revert to private visibility for msk-impact data repo
#1235
sheridancbio
closed
5 months ago
1
Re-index Public Db
#1234
averyniceday
closed
5 months ago
0
Support ACCESS-HEME gene panel
#1233
n1zea144
closed
4 months ago
1
Generate age_at_sequencing_reported_years for Genie
#1232
callachennault
closed
4 months ago
1
Submit firewall port opening requests for new dev server
#1231
callachennault
closed
4 months ago
1
Migrate onto Java21
#1230
averyniceday
closed
4 months ago
7
Importers/Fetchers Java21 + Core Repo in Prod
#1229
averyniceday
closed
2 months ago
1
Downsize RDS Node
#1228
averyniceday
closed
5 months ago
2
Resolve Datadog Warnings on Dev/Prod Machine
#1227
averyniceday
closed
4 months ago
1
Setup Sophia Cohort GitHub + Scripts
#1226
averyniceday
closed
5 months ago
0
Assist in Migrating RDS Node to V2 Public Account
#1225
averyniceday
closed
5 months ago
0
Cleanup Sophia cohort generation script and setup data directories
#1224
callachennault
closed
4 months ago
2
Add sequencing date to clinical sample file for Sophia
#1223
callachennault
closed
5 months ago
1
Switchover Public to point to cgds_public_v5
#1222
averyniceday
closed
5 months ago
0
Clarify Production VPC Rollover
#1221
averyniceday
closed
5 months ago
0
Spin up Dev Cluster in new Alkira VPC
#1220
averyniceday
closed
5 months ago
0
Confirm and Fix Logic Bug for Patient Purge
#1219
averyniceday
closed
5 months ago
1
Adjust Annotation/Reannotation Behavior
#1218
averyniceday
closed
5 months ago
0
Confirm Memory Issue Location (CVR Fetcher)
#1217
averyniceday
closed
5 months ago
0
Modify AZ cohort generation to integrate with CDM pipeline changes
#1216
callachennault
closed
5 months ago
1
Add git cleanup step to AZ-MSKIMPACT cohort generation
#1215
callachennault
closed
5 months ago
0
Duplicate variants in MSK_Sophia_LungPts_cBio_mutations_extended - 7-27-23.txt
#1214
n1zea144
closed
5 months ago
1
Manual generation of AZ 11/20 delivery
#1213
callachennault
closed
6 months ago
0
Debug failed/stalled dmp fetches/imports
#1212
sheridancbio
closed
6 months ago
0
Generate count of ACCESS samples across Sophia cohorts
#1211
callachennault
closed
6 months ago
0
Generate cohorts for Sophia: Sarcoma, lung, and uterine
#1210
callachennault
closed
4 months ago
0
Gene Table Migration - Create DBs
#1209
averyniceday
closed
6 months ago
0
Setup Airflow Persistent Logging
#1208
averyniceday
closed
3 months ago
1
Extract Tracking Table Specifications
#1207
averyniceday
closed
4 months ago
1
Extract Tracking Table Integrated
#1206
averyniceday
closed
4 months ago
1
Debug Airflow Stability Issues
#1205
averyniceday
closed
2 months ago
1
Update K8S/AWS Config to Allow Caching to V2 Account
#1204
averyniceday
closed
5 months ago
0
Test CDM Pipeline Timings
#1203
averyniceday
closed
6 months ago
0
Airflow Server moved to prod VPC
#1202
averyniceday
closed
4 months ago
1
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