kosta777 parallel-genomeseq issues

kosta777 / parallel-genomeseq

Parallelization of popular genome sequencing algorithms

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Bump scipy from 1.3.3 to 1.10.0 in /py

#33 dependabot[bot] opened 1 year ago
0
Bump numpy from 1.17.4 to 1.22.0 in /py

#32 dependabot[bot] opened 2 years ago
3
Use uint8 in AVX2

#31 huanglangwen closed 4 years ago
0
Notes meeting 02/11

#30 spaceben opened 4 years ago
0
Fm index

#29 hanyao8 closed 4 years ago
1
Benchmarking queries against UNIPROT Database

#28 kosta777 opened 4 years ago
0
Benchmarking with intel vtune

#27 huanglangwen opened 4 years ago
1
Docs: Preliminary report

#26 spaceben opened 4 years ago
1
Openmp

#25 hanyao8 closed 4 years ago
0
Openmp

#24 hanyao8 closed 4 years ago
0
master pull

#23 hanyao8 closed 4 years ago
0
Build on Leonhard cluster

#22 huanglangwen opened 4 years ago
3
switched to iterative

#21 spaceben closed 4 years ago
0
Iterative traceback

#20 spaceben closed 4 years ago
0
test cases for SM and Similarity Matrix added

#19 spaceben closed 4 years ago
1
Skewed similarity matrix and OpenMP Parallel LocalAligner

#18 huanglangwen closed 4 years ago
8
End-to-end (black box) testing

#17 spaceben opened 4 years ago
0
similarity_matrix

#16 hanyao8 closed 4 years ago
1
Coarse mpi

#15 kosta777 closed 4 years ago
6
Input files

#14 kosta777 opened 4 years ago
2
OpenMP for fine-grain parallelization

#13 spaceben opened 4 years ago
1
Setup MPI

#12 huanglangwen closed 4 years ago
0
CMake Config for MPI

#11 huanglangwen closed 4 years ago
0
Library options for medium to fine grained parallelization

#10 huanglangwen opened 4 years ago
1
Reimplementation of Smith-Waterman

#9 spaceben closed 4 years ago
9
Tasking as discussed on Sunday

#8 spaceben closed 4 years ago
3
Failure to build

#7 spaceben closed 4 years ago
4
API change to `LocalAligner`

#6 huanglangwen closed 4 years ago
8
Switch to Eigen

#5 huanglangwen closed 4 years ago
2
Segmentation Error in SWAligner

#4 huanglangwen closed 4 years ago
1
Format code and move to C++17

#3 huanglangwen closed 4 years ago
1
Coding Style

#2 huanglangwen closed 4 years ago
6
Add CMake Support

#1 huanglangwen closed 4 years ago
0