lazappi clustree issues

lazappi / clustree

Visualise Clusterings at Different Resolutions

https://lazappi.github.io/clustree/

GNU General Public License v3.0

215 stars 15 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Round node_label_aggr output

#103 smith6jt-cop closed 1 month ago
2
Error in `guide_geom()`: <Guide> classes have been rewritten as <ggproto> classes.

#102 mariavam closed 7 months ago
2
Difference between `size` and `count` when plotting gene expression level

#101 denvercal1234GitHub closed 9 months ago
1
How to modify colour scales?

#100 JasperGattiker closed 10 months ago
2
Missing edges in clustering tree

#99 wbvguo closed 7 months ago
2
Error in clustree.matrix(clusterings, prefix, metadata = metadata, ...) : Assertion on 'x' failed: Contains missing values (row 23366, col 1).

#98 LiHangzls closed 9 months ago
2
Release clustree 0.5.1

#97 lazappi closed 11 months ago
0
Update CI

#96 lazappi closed 12 months ago
0
Improve Seurat and ggplot compatibility

#95 lazappi closed 12 months ago
0
The X portion of your clustering column names could not be converted to a number. Please check that your prefix and suffix are correct

#94 denvercal1234GitHub closed 1 year ago
1
Prepare for upcoming Seurat v5 release

#93 Gesmira closed 12 months ago
5
Is there a way to label edges?

#92 plijnzaad opened 1 year ago
1
Adding node specific labels

#91 gomeznick86 closed 1 year ago
2
Error: Less than two column names matched the prefix: SCT_snn_res.

#90 lc-hhh closed 1 year ago
1
Clustree not accurate

#89 koksalburak closed 1 year ago
4
Error in `geom_edge_link()` Problem while converting geom to grob.

#88 Lucy13579 closed 1 year ago
2
Error: could not find function "try_fetch"

#87 MANZHAOHUI closed 1 year ago
3
Problem using clustree with a Seurat object

#86 Elena983 closed 1 year ago
6
Error for Seurat - gpar' element 'lwd' must not be length 0

#85 PrashINRA closed 1 year ago
1
Error in check.length(gparname) : 'gpar' element 'lwd' must not be length 0

#84 amingson closed 1 year ago
3
Error in `dplyr::select()`: ! <text>:1:5: unexpected symbol

#83 zhangdudu0 closed 1 year ago
8
Error in check.length(gparname) : 'gpar' element 'lwd' must not be length 0

#82 rekren opened 2 years ago
20
Release clustree 0.5.0

#81 lazappi closed 2 years ago
0
Added control of the node text rotation

#80 kvittingseerup closed 2 years ago
5
Rotate node labels

#79 kvittingseerup closed 2 years ago
3
Allow plotting nodes as pie charts

#78 mdstobbe closed 2 years ago
4
Filtering nodes in the clustering graph

#77 repeatpipettor closed 2 years ago
2
Release clustree 0.4.4

#76 lazappi closed 2 years ago
0
Interpretation of cluster results

#75 bari89 closed 3 years ago
1
Node text alignment

#74 denertekin closed 3 years ago
2
Using average stability to optimise clustering resolution

#73 nbartonicek closed 3 years ago
1
Error : The X portion of your clustering column names could not be converted to a number.

#72 chitopia closed 3 years ago
2
a question about the publication

#71 abedkurdi closed 3 years ago
2
Selecting assay and expression type for Seurat objects

#70 TrumanZYX closed 3 years ago
1
How to use Seurat object directly in Clustree ?

#69 ahmadsam66 closed 3 years ago
7
Update CI

#68 lazappi closed 3 years ago
0
Using clustree with CATALYST::cluster() output

#67 antoine4ucsd closed 3 years ago
2
How to access calculated SC3 stabilities?

#66 mr-september closed 3 years ago
7
cluster with the same cells at different resolutions have different median genes

#65 jingyu9603 closed 3 years ago
5
Understanding Clustree image

#64 ashokpatowary closed 4 years ago
1
Weird result when using clustree on a subset seurat object

#63 PernilleYR closed 2 years ago
10
Unconnected nodes without edges

#62 anos-s closed 4 years ago
2
Use PCA projection to group clusters

#61 lazappi opened 4 years ago
0
Select adjoining resolutions based on ARI

#60 lazappi opened 4 years ago
0
Add argument to reverse tree

#59 lazappi opened 4 years ago
1
clustree_overlay on UMAP from a seurat object

#58 naddsch closed 4 years ago
6
Merge develop into master for release 0.4.3

#57 lazappi closed 4 years ago
0
Release clustree 0.4.3

#56 lazappi closed 4 years ago
0
Pass information about current cluster to aggregation functions

#55 lazappi opened 4 years ago
1
Plot proportion of cells per level as label

#54 hummuscience closed 4 years ago
8