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lh3
/
minigraph
Sequence-to-graph mapper and graph generator
https://lh3.github.io/minigraph
MIT License
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Bacterial pangenome?
#67
schorlton
closed
2 years ago
2
Overlapping segments
#66
elcortegano
closed
2 years ago
1
Question regarding -L (min variant length) parameter
#65
cjain7
opened
2 years ago
3
Segmentation fault during graph generation with two genomes
#64
cjain7
closed
2 years ago
6
Self-loop and cycles in rGFA
#63
gsc74
opened
2 years ago
5
Minigraph on gigabase-sized chromosomes
#62
agolicz
closed
2 years ago
9
How can I get the entire length in a bubble
#61
Morriyaty
closed
2 years ago
1
Evaluate the Performance of sequence-to-graph mapping in minigraph and GraphAligner.
#60
gsc74
closed
2 years ago
5
Problem with graph generation with hundreds of genome
#59
yipukangda
closed
2 years ago
1
minigraph -S call missing data
#58
Xavster838
closed
2 years ago
2
Is there any solution or plan to use Minigraph to call SV from long read?
#57
wzhang42
closed
2 years ago
1
minigraph call SV for Pacbio long reads but got empty .bed files
#56
wzhang42
closed
2 years ago
1
lchain_rmq assertion fail introduced between 0.15-r426 and 0.15-r434-dirty
#55
ASLeonard
closed
2 years ago
4
The main difference between minigraph and PGGB pipeline
#54
biozzq
closed
2 years ago
1
question about constructing a pan-genome graph
#53
Aannaw
closed
2 years ago
1
Incorrect GAF path output if alignment spans 1 bp node
#52
ASLeonard
closed
2 years ago
3
Shasta input fasta
#51
colindaven
closed
2 years ago
1
Question about the coordinates in bubble output
#50
egoltsman
opened
3 years ago
1
Coordinates of arbitrary sequence in graph
#49
brunocontrerasmoreira
closed
3 years ago
1
Degenerate graph constructed
#48
Pigrenok
opened
3 years ago
1
Typo?
#47
JLP-BioInf
closed
3 years ago
0
a bubble with all paths matching?
#46
egoltsman
opened
3 years ago
0
Few nodes = poor alignment or good ?
#45
egoltsman
opened
3 years ago
2
Question on allele
#44
RenzoTale88
closed
3 years ago
1
gfa not finishing (stops at fasta indexing?)
#43
GenerGener
closed
3 years ago
2
A 1 mb bubble - fact or fiction?
#42
egoltsman
closed
3 years ago
4
Other tools to contruct GFA from genome assemblies
#41
ms-gx
closed
2 years ago
2
Effect of changing the minimizer occurrence threshold interval
#40
egoltsman
opened
3 years ago
0
extract bubble unitigs from unitig.gfa
#39
zhenzhenyang-psu
opened
3 years ago
0
Does minigraph support mixed-case sequence?
#38
egoltsman
closed
3 years ago
7
[question] Which preset for indiviual assembly gene mapping to minigraph gfa？
#37
baozg
closed
3 years ago
1
read mapping to sam?
#36
cistarsa
opened
3 years ago
1
--call outputs a path that doesn't exist in the graph
#35
wwliao
opened
3 years ago
3
Interpretation of "." in --call output
#34
ASLeonard
closed
3 years ago
1
extract non-reference sequence from the var.bed
#33
baozg
closed
3 years ago
3
empty gfa file
#32
rthapa1
opened
3 years ago
7
GFA1 to rGFA
#31
RenzoTale88
closed
3 years ago
1
Establishing paths faithfully
#30
egoltsman
closed
3 years ago
4
How to visualize constructed reference graph
#29
yipukangda
closed
3 years ago
4
Should GAF have a similar concept to secondary alignment from SAM?
#28
SHuang-Broad
closed
3 years ago
7
Request add P line
#27
Xuelei-Dai
closed
3 years ago
1
How to get the GFA format not default rGFA?
#26
Xuelei-Dai
closed
3 years ago
6
Which preset for mapping CCS reads?
#25
SHuang-Broad
closed
3 years ago
1
Fragmented back-mapping in a 2-sample graph
#24
egoltsman
opened
3 years ago
7
Visualization and SV detection after graph genome construction
#23
jialei0701
closed
3 years ago
5
Does minigraph build genome graph including structural variants from a SV caller?
#22
clairemerot
opened
4 years ago
3
program Aborted
#21
shiyi-pan
closed
4 years ago
2
different ranks?
#20
cistarsa
opened
4 years ago
1
How should we interpret `SR` of the `L` line in rGFA
#19
SHuang-Broad
opened
4 years ago
5
Question about 1-1 mappings
#18
mrvollger
closed
4 years ago
2
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