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lh3
/
miniprot
Align proteins to genomes with splicing and frameshift
https://lh3.github.io/miniprot/
MIT License
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Create protein-mRNA-annotator.py
#62
gauravcodepro
closed
3 months ago
0
Create miniprot.py
#61
gauravcodepro
closed
3 months ago
0
Use information from conserved introns
#60
mparker2
opened
4 months ago
2
large chromosome alignment may have empty output
#59
huangnengCSU
opened
4 months ago
0
Inserted internal stop codons are not penalized
#58
Percud
closed
4 months ago
2
Different translation tables
#57
giacomomutti
closed
4 months ago
7
Pgap 9185 gencode 1
#56
azat-badretdin
closed
4 months ago
3
GFF3 output is malformed for stop_codon features
#55
carsonhh
closed
4 months ago
1
Inconsistent use of operators in the cs tag?
#54
Percud
closed
4 months ago
1
A way to prefer closer exons in tandemly duplicated genes on the same strand
#53
melop
closed
7 months ago
1
Using miniprot to identify homologous transposable elements?
#52
BitaoQiu
opened
8 months ago
0
fix man page typo
#51
diekhans
closed
5 months ago
0
Aligning to distant homologues
#50
ens-sb
opened
9 months ago
2
Is it necessary to shield repetitive sequences?
#49
XXH123a
closed
11 months ago
1
Compile error on AMD EPYC 7742
#48
ftegenfe
closed
11 months ago
1
There is always an additional amino acid residue after the final stop codon of the protein sequence with --trans
#47
jackie-duang
closed
4 months ago
1
An error when looking for 200 proteins in a genome
#46
gilloe
opened
1 year ago
6
Information function --trans
#45
rlibouba
closed
1 year ago
1
'Killed' message from index build
#44
crowja
closed
1 year ago
3
miniprot do not include stop_codon in gtf file?
#43
xiekunwhy
closed
1 year ago
1
Filter by alignment quality
#42
stubrown
closed
4 months ago
1
Internal stop codons
#41
KhadkaBijen
opened
1 year ago
0
Report errors mapping amino acids
#40
kdm9
closed
1 year ago
1
Memory error
#39
tomasbruna
closed
1 year ago
5
Segmentation fault
#38
KatharinaHoff
closed
1 year ago
0
duplicate and close variants of the same alignment in the output
#37
azat-badretdin
opened
1 year ago
4
limiting max intron size leads to removal of intronless alignment
#36
azat-badretdin
closed
1 year ago
8
Chimeric alignments spanning multiple adjacent genes
#35
vkkodali
opened
1 year ago
3
Negative length for introns in cs:Z: tag
#34
vkkodali
opened
1 year ago
4
Valid introns being reported as deletions
#33
vkkodali
closed
1 year ago
7
Very large number of large introns for a plant genome
#32
kkrizanovic
closed
1 year ago
2
typo on the man page?
#31
azat-badretdin
closed
1 year ago
2
How to achieve higher sensitivity?
#30
zhaijj
opened
1 year ago
3
deletion in GFF output
#29
YoshiKawahara
closed
1 year ago
1
aligning to Oxford Nanopore simplex reads (Q16)
#28
avilella
closed
1 year ago
1
How to get exon and UTR cordinates like GenomeThreader?
#27
arslan9732
closed
1 year ago
3
Question: using Miniprot for searching small peptides
#26
andreas-wilm
opened
1 year ago
0
out-of-memory error
#25
rwhetten
closed
1 year ago
1
docs: fix type for cg, cs tags in PAF docs
#24
heuermh
closed
1 year ago
2
conda for miniprot
#23
bijendrabio
closed
1 year ago
1
Missing option --gff-only in help
#22
alexcorm
closed
1 year ago
1
Installing minprot using conda
#21
bijendrabio
closed
1 year ago
1
gff rank calculation
#20
chklopp
closed
1 year ago
1
Use for prokaryotes?
#19
thibaudnis
closed
1 year ago
1
ID filed in attributes
#18
vilperte
closed
1 year ago
1
Using miniprot projections as evidence class in evidencemodeler
#17
yuzhenpeng
closed
1 year ago
5
Splice model
#16
arunvv90
closed
1 year ago
3
-j for plants or fungi
#15
xiekunwhy
closed
1 year ago
1
Docker
#14
stephenturner
closed
1 year ago
1
Limit to reported alignments?
#13
rwhetten
closed
1 year ago
1
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