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loculus-project
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loculus
An open-source software package to power microbial genomic databases
https://loculus.org
GNU Affero General Public License v3.0
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fix(kubernetes): don't create `external_metadata_updater` user when `disableEnaSubmission`
#3126
fengelniederhammer
closed
3 weeks ago
1
feat: support filtering for warnings only on the review page
#3125
fhennig
closed
1 week ago
12
feat(ingest, backend): do not approve curated revisions (by users other than insdc_ingest_user), send notification if ingest wants to revise a curated sequence
#3124
anna-parker
closed
3 weeks ago
2
[DO NOT MERGE] Add ReVSeq test instance
#3123
chaoran-chen
opened
3 weeks ago
0
bug: with Webkit, registering an account when email verification is not required leads to broken state
#3122
theosanderson
opened
3 weeks ago
0
feat(integration): Add initial "integration tests"
#3121
theosanderson
opened
3 weeks ago
0
chore(website): Replace ManagedErrorFeedback with react-toastify
#3120
theosanderson
closed
3 weeks ago
7
Org card alt2 for preview
#3119
theosanderson
closed
2 weeks ago
0
Org card alt1 for preview
#3118
theosanderson
closed
2 weeks ago
0
Author reformatting follow-up fixes
#3117
corneliusroemer
opened
3 weeks ago
0
Review page cards: use display names for fields not technical names
#3116
theosanderson
closed
4 days ago
1
Improve design for edit/revise form
#3115
theosanderson
opened
3 weeks ago
0
Error/warnings should include both the `processed` and `unprocessed` fields it relates to
#3114
theosanderson
opened
3 weeks ago
0
[DO NOT MERGE] Add WISE RSV test instance
#3113
chaoran-chen
opened
3 weeks ago
0
feat(ingest, backend): Modify ingest to handle curation of ingested sequences
#3112
anna-parker
opened
3 weeks ago
0
feat(website): add revise form
#3111
theosanderson
closed
3 weeks ago
2
chore(deps): bump the minor group across 1 directory with 15 updates
#3110
dependabot[bot]
closed
3 weeks ago
1
Should we rename the `getSequenceEntryToedit` endpoint? Just `getSequenceEntry`?
#3109
theosanderson
opened
3 weeks ago
0
chore(kubernetes): silo 0.3.1
#3108
fengelniederhammer
closed
3 weeks ago
0
chore(deps): bump the minor group across 1 directory with 15 updates
#3107
dependabot[bot]
closed
3 weeks ago
1
Modify how the backend handles "new metadata" fields e.g. when the config changes
#3106
anna-parker
closed
3 weeks ago
5
Curate NCBI geolocation metadata
#3105
anna-parker
opened
3 weeks ago
1
chore(deps-dev): bump eslint-plugin-react-hooks from 4.6.2 to 5.0.0 in /website
#3104
dependabot[bot]
opened
3 weeks ago
1
chore(deps-dev): bump uuid from 10.0.0 to 11.0.2 in /website
#3103
dependabot[bot]
closed
3 weeks ago
1
chore(deps): bump openid-client from 5.7.0 to 6.1.3 in /website
#3102
dependabot[bot]
closed
2 days ago
2
chore(deps): bump the patch group in /website with 5 updates
#3101
dependabot[bot]
closed
3 weeks ago
0
chore(deps): bump the minor group in /website with 15 updates
#3100
dependabot[bot]
closed
3 weeks ago
1
wip: pseudocode to not auto-approve curated versions
#3099
corneliusroemer
closed
2 weeks ago
1
chore(deps): bump com.github.luben:zstd-jni from 1.5.6-6 to 1.5.6-7 in /backend
#3098
dependabot[bot]
closed
3 weeks ago
1
chore(deps): bump org.springframework.boot from 3.3.4 to 3.3.5 in /backend in the patch group
#3097
dependabot[bot]
closed
3 weeks ago
1
chore(deps): bump the minor group in /backend with 7 updates
#3096
dependabot[bot]
closed
3 weeks ago
0
Review page: total number of sequences fluctuates and can be too high
#3095
chaoran-chen
opened
3 weeks ago
8
feat(backend): Allow getting original data for released sequences
#3094
theosanderson
closed
3 weeks ago
1
Slow upload of many sequences
#3093
chaoran-chen
opened
3 weeks ago
0
feat(webpage, revision): Add an edit button to sequences that a user can revise
#3092
anna-parker
closed
3 weeks ago
4
Make website memory limit for node configurable and sync with kubernetes memory resource limits
#3091
theosanderson
opened
3 weeks ago
0
fix(website): Increase website memory limit to 1024 mb to avoid crashes with very large numbers of deletions
#3090
theosanderson
closed
3 weeks ago
1
Ingest: Explore submitting updated sequences (assemblies) to ENA
#3089
corneliusroemer
opened
3 weeks ago
0
Add original submission/release date in get-released-data (in addition to the version's)
#3088
corneliusroemer
opened
3 weeks ago
0
Ingest should not auto-approve submissions that weren't submitted by "insdc_ingest_user"
#3087
corneliusroemer
closed
3 weeks ago
1
Ingest: Explore submitting updated metadata as biosample updates to ENA
#3086
corneliusroemer
closed
1 week ago
9
How to maintain curation changes across ingest revisions
#3085
corneliusroemer
opened
3 weeks ago
1
Ingest should not treat curator revisions as latest and revise
#3084
corneliusroemer
opened
3 weeks ago
8
chore: bump msw; switch to happy-dom for testing
#3083
fhennig
closed
2 weeks ago
2
chore: Upgrade to eslint 9
#3082
fhennig
opened
3 weeks ago
0
wip: Demo of using pagefind search
#3081
corneliusroemer
opened
3 weeks ago
0
Curator information
#3080
ammaraziz
opened
3 weeks ago
2
Pagefind for search
#3079
corneliusroemer
opened
3 weeks ago
2
LAPIS client wrongly send "Accept: application/json, ..." when it expects plaintext (FASTA)
#3078
corneliusroemer
opened
4 weeks ago
1
feat(chore): Update to update to silo 0.3.0, lapis to 0.3.7, fix e2e tests
#3077
anna-parker
closed
3 weeks ago
11
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