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malariagen
/
malariagen-data-python
Analyse MalariaGEN data from Python
https://malariagen.github.io/malariagen-data-python/latest/
MIT License
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Speed up plot_haplotype_clustering()
#449
alimanfoo
closed
9 months ago
0
Biallelic SNP calls
#448
alimanfoo
closed
9 months ago
2
Update switcher.json
#447
leehart
closed
10 months ago
1
Guard against free base maps going out of service
#446
leehart
opened
10 months ago
0
Remove Stamen basemaps
#445
leehart
closed
10 months ago
4
Review API docs & refactor gene CNV frequencies functions
#444
alimanfoo
closed
10 months ago
2
KeyError: 'Stamen'
#443
alimanfoo
closed
10 months ago
6
Review lists of functions to included in the API documentation
#442
leehart
closed
10 months ago
1
Add option to use cohorts as colour or symbol in plot_haplotype_clustering
#441
jonbrenas
closed
9 months ago
6
Publish to PyPI failed for v7.14.0
#440
leehart
closed
10 months ago
1
Update switcher.json
#439
leehart
closed
10 months ago
2
pytest error
#438
jonbrenas
closed
10 months ago
3
Enabling the use of user-defined cohorts in more analysis
#437
jonbrenas
closed
9 months ago
1
Access cohort group data
#436
ahernank
closed
6 months ago
4
Add functions to access cohort group metadata
#435
ahernank
opened
10 months ago
0
Fix test for sample sets with no phasing data
#434
ahernank
closed
11 months ago
1
Add test for sample sets with no phasing data
#433
ahernank
closed
11 months ago
1
Coverage of tests failing for `hap_data`
#432
ahernank
closed
11 months ago
0
Delete init character on bash examples - `README.md`
#431
ahernank
closed
11 months ago
4
Add `study_id` & `study_url` to general metadata
#430
ahernank
closed
11 months ago
1
Update README.md re tagged docs
#429
leehart
closed
11 months ago
2
Pin cohorts_analysis in tests, notebooks
#428
leehart
closed
11 months ago
4
Pin cohorts version in tests to avoid failures
#427
leehart
closed
11 months ago
0
Update Af1 cohort refs in notebooks, tests
#426
leehart
closed
11 months ago
3
Update plot_h12_h1x.ipynb
#425
leehart
closed
11 months ago
4
CI failure, notebooks, h12 plot
#424
leehart
closed
11 months ago
1
Add API docs
#423
leehart
closed
11 months ago
8
af1.g123_gwss() - 'site_mask' parameter does not default to "funestus"
#422
cclarkson
closed
8 months ago
1
plot_samples_interative_map() - `center` and `zoom` parameters
#421
cclarkson
opened
1 year ago
0
pip install fails on OSX + arm64
#420
bjeight
opened
1 year ago
2
Add pairwise fst functions
#419
KellyLBennett
closed
9 months ago
36
Update cohorts version & expected frq col
#418
ahernank
closed
1 year ago
9
Test failures due to year mismatch
#417
leehart
closed
1 year ago
2
Add tools to bokeh plots
#416
harbi811
closed
1 year ago
5
haplotype networks does not work on bespin
#415
jorels1
opened
1 year ago
2
Add tools to bokeh plots
#414
alimanfoo
closed
1 year ago
1
Implement plot_samples_bar()
#413
alimanfoo
closed
1 year ago
3
Switch to folium for interactive maps?
#412
alimanfoo
opened
1 year ago
0
Refactor CNV data functions for Anopheles (inc. Af1)
#411
leehart
closed
1 year ago
19
Cannot use variables in sample query
#410
amakunin
opened
1 year ago
2
Add check for missing CNV HMM data
#409
leehart
closed
2 months ago
4
Relax ipyleaflet pinning
#408
alimanfoo
closed
1 year ago
1
Label genes
#407
alimanfoo
opened
1 year ago
1
Use webgl for bokeh genome plots
#406
alimanfoo
closed
1 year ago
3
Anopheles refactor part 7 - AIM genotype data
#405
alimanfoo
closed
1 year ago
2
Anopheles refactor CNV data access functions
#404
alimanfoo
closed
1 year ago
4
Fix for API breakage in numpydoc_decorator
#403
alimanfoo
closed
1 year ago
1
Import failing due to name change in numpydoc_decorator
#402
alimanfoo
closed
1 year ago
0
Anopheles refactor part 6 - haplotype data
#401
alimanfoo
closed
1 year ago
4
Upgrade bokeh to 3.1
#400
alimanfoo
closed
1 year ago
2
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