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mani2012
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BatchQC
Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
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updated correlation.R function to make tables
#26
jalilsharif
opened
10 months ago
0
batchqc not providing complete results in Mac M1/M2
#25
jalilsharif
closed
10 months ago
0
Error in if (var(data.matrix[i, cond2[[j]]]) == 0) { : missing value where TRUE/FALSE needed
#24
widsquid
opened
2 years ago
3
Error in if (spvaltext2 == 0) { : missing value where TRUE/FALSE needed
#23
LefterisZ
opened
2 years ago
1
Including combat_seq
#22
cmatKhan
opened
2 years ago
3
Error in quantile.default(med_cor, p = 0.25)--missing values and NaNs not allowed...
#21
DanSchnell
opened
3 years ago
2
limma list in batchqc_report.html defaults to ComBat corrected version
#20
joshua-theisen
opened
3 years ago
0
Download corrected data
#19
cadyyuheng
opened
3 years ago
5
Error running analyses in the shiny app
#18
marykthompson
opened
3 years ago
2
pca plot not loaded---urgent please
#17
garimaloh
closed
3 years ago
2
Error in if (var(data.matrix[i, cond2[[j]]]) == 0) { : missing value where TRUE/FALSE needed
#16
achaiboonchoe
closed
4 years ago
3
Idle r shiny
#15
achaiboonchoe
opened
4 years ago
1
Running errors
#14
YulongNiu
opened
4 years ago
1
data is always log2cpm transformed in correlation.R
#13
nrachman
opened
5 years ago
0
PCA plot tooltips show incorrect values with ComBat and SVA
#12
meono
closed
5 years ago
1
Options for robust tests & visualization for moment estimates
#11
zhangyuqing
closed
6 years ago
0
Unmet Dependencies
#10
definitelysean
closed
8 years ago
1
Fixed boxplot widths
#9
tfaits
closed
8 years ago
0
Changed the order of the tabs, and added a hover to box plot that shows
#8
selbyh
closed
8 years ago
0
Changed “combat” to “comBat”, and made the circular dendrogram circular!
#7
selbyh
closed
8 years ago
0
Added circular dendrogram function my.plot.
#6
selbyh
closed
8 years ago
0
Modified the x-axis title of the box plots.
#5
selbyh
closed
8 years ago
0
Corrected the box plots.
#4
selbyh
closed
8 years ago
0
Added sample boxplots colored by batch
#3
wevanjohnson
closed
8 years ago
0
Surrogate Variable Analysis
#2
claireruberman
closed
8 years ago
0
Sample correlation and heatmap
#1
hcorrada
closed
9 years ago
0