mani2012 BatchQC issues

mani2012 / BatchQC

Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.

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issues

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updated correlation.R function to make tables

#26 jalilsharif opened 1 year ago
0
batchqc not providing complete results in Mac M1/M2

#25 jalilsharif closed 1 year ago
0
Error in if (var(data.matrix[i, cond2[[j]]]) == 0) { : missing value where TRUE/FALSE needed

#24 widsquid opened 3 years ago
3
Error in if (spvaltext2 == 0) { : missing value where TRUE/FALSE needed

#23 LefterisZ opened 3 years ago
1
Including combat_seq

#22 cmatKhan opened 3 years ago
3
Error in quantile.default(med_cor, p = 0.25)--missing values and NaNs not allowed...

#21 DanSchnell opened 3 years ago
2
limma list in batchqc_report.html defaults to ComBat corrected version

#20 joshua-theisen opened 3 years ago
0
Download corrected data

#19 cadyyuheng opened 4 years ago
5
Error running analyses in the shiny app

#18 marykthompson opened 4 years ago
2
pca plot not loaded---urgent please

#17 garimaloh closed 4 years ago
2
Error in if (var(data.matrix[i, cond2[[j]]]) == 0) { : missing value where TRUE/FALSE needed

#16 achaiboonchoe closed 4 years ago
3
Idle r shiny

#15 achaiboonchoe opened 4 years ago
1
Running errors

#14 YulongNiu opened 5 years ago
1
data is always log2cpm transformed in correlation.R

#13 nrachman opened 6 years ago
0
PCA plot tooltips show incorrect values with ComBat and SVA

#12 meono closed 6 years ago
1
Options for robust tests & visualization for moment estimates

#11 zhangyuqing closed 7 years ago
0
Unmet Dependencies

#10 definitelysean closed 8 years ago
1
Fixed boxplot widths

#9 tfaits closed 8 years ago
0
Changed the order of the tabs, and added a hover to box plot that shows

#8 selbyh closed 9 years ago
0
Changed “combat” to “comBat”, and made the circular dendrogram circular!

#7 selbyh closed 9 years ago
0
Added circular dendrogram function my.plot.

#6 selbyh closed 9 years ago
0
Modified the x-axis title of the box plots.

#5 selbyh closed 9 years ago
0
Corrected the box plots.

#4 selbyh closed 9 years ago
0
Added sample boxplots colored by batch

#3 wevanjohnson closed 9 years ago
0
Surrogate Variable Analysis

#2 claireruberman closed 9 years ago
0
Sample correlation and heatmap

#1 hcorrada closed 9 years ago
0