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marcnol
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pyHiM
Multiplexed DNA-FISH data analysis pipeline
GNU Lesser General Public License v3.0
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Accept new format for 3D images
#198
XDevos
closed
6 months ago
1
Check if stardist model folder can be made lighter
#197
XDevos
closed
6 months ago
1
Integrate stardist model inside pyHiM
#196
XDevos
closed
8 months ago
0
Add mask segmentation with cellpose
#195
XDevos
closed
7 months ago
0
Feature/mask cellpose
#194
marcnol
closed
8 months ago
0
Refactor/align images to RegisterGlobal Feature
#193
XDevos
closed
8 months ago
0
Inputs aren't detected when running "-C project,register_global"
#192
XDevos
closed
8 months ago
0
added cellpose segmentation
#191
marcnol
closed
8 months ago
0
Document "assign masks to labels"
#190
XDevos
opened
8 months ago
0
recoded assignment of labels
#189
marcnol
closed
8 months ago
0
bootstrapping
#188
marcnol
closed
9 months ago
0
Bootstrapping
#187
marcnol
closed
9 months ago
0
Split outputs between data and human readable PNG
#186
XDevos
closed
9 months ago
0
trace_to_matrix.py - missing module
#185
MarionBardou
closed
9 months ago
3
Update routine names
#184
XDevos
closed
9 months ago
0
Rename parameter filename
#183
XDevos
closed
9 months ago
0
Fix - Clean deprecated outputs
#182
XDevos
closed
9 months ago
0
Fix (ROI) - Ensures ROI uniqueness
#181
XDevos
closed
9 months ago
0
Check every "TODO" inside the code
#180
XDevos
opened
9 months ago
0
Update the output folder structure
#179
XDevos
closed
8 months ago
0
Update routine names
#178
XDevos
closed
9 months ago
0
Rename input parameter file
#177
XDevos
closed
9 months ago
0
Clean `segmentMasks` outputs
#176
XDevos
closed
9 months ago
0
Clean `alignImages3D` outputs
#175
XDevos
closed
9 months ago
0
Provide a documentation to interprate output images (PNG)
#174
XDevos
opened
9 months ago
0
Check if `*_intensityHist.png` is a deprecated output
#173
XDevos
opened
9 months ago
0
Allow a path for the parameter file as input of pyHiM
#172
XDevos
closed
9 months ago
0
Split outputs between data and human readable images
#171
XDevos
closed
9 months ago
0
Provide a template or a generator for a bash script to run pyHiM with multiple ROI
#170
XDevos
opened
9 months ago
0
Update the input parameter file with one section by routine
#169
XDevos
opened
9 months ago
0
compare_PWD_matrices.py - output format
#168
MarionBardou
closed
9 months ago
1
Refactor/parameters
#167
XDevos
closed
10 months ago
0
Feature/refactor plots
#166
marcnol
closed
10 months ago
0
Rewrite figure plotting scripts
#165
marcnol
opened
10 months ago
0
added filter for max distance
#164
marcnol
closed
10 months ago
0
segmentSources3D bug related to network name
#163
marcnol
closed
9 months ago
5
terminal output infoList
#162
marcnol
closed
10 months ago
1
bug when running threads in dev
#161
marcnol
closed
10 months ago
3
Doc (dev) - describe no python files & build doc
#160
XDevos
closed
10 months ago
0
Refactor - makeProjections, Pipeline, Dask
#159
XDevos
closed
10 months ago
0
Fix/label mask
#158
XDevos
closed
10 months ago
0
Fix - Bug with string comparison
#157
XDevos
closed
11 months ago
0
Refactor/fstring
#156
XDevos
closed
11 months ago
0
Fix issue #127
#155
XDevos
closed
11 months ago
0
Test/tracing
#154
marcnol
closed
11 months ago
0
changed how matrix is converted into vector
#153
marcnol
closed
11 months ago
0
Refactor makeProjections
#152
XDevos
closed
11 months ago
0
Refactor/src
#151
XDevos
closed
12 months ago
0
RT Legend for Trace_3D_barcode_mask:[...]_ROI:[...]_traces_XYZ_ROI[...].png
#150
MarionBardou
opened
12 months ago
1
begin option dist max
#149
marcnol
closed
12 months ago
0
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