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matsengrp
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larch
Inference and manipulation of history DAGs
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Conda packaging
#88
davidrich27
opened
15 hours ago
0
hard time-limit and parsimony based stopping criteria added
#87
marybarker
closed
1 week ago
0
Optimized DAG contains nodes with identical LeafSets and CGs but different node IDs.
#86
willdumm
opened
3 weeks ago
0
DAG Utilites
#85
davidrich27
closed
2 months ago
0
weight enumeration instead of strictly optimal weight calculation
#84
marybarker
closed
2 months ago
0
Dag io custom format
#83
davidrich27
closed
2 months ago
2
small updates to merge util, rf-sampling, and trimming
#82
marybarker
closed
3 months ago
0
DAG I/O: protobuf to custom format
#81
davidrich27
closed
2 months ago
1
Added CI build github action.
#80
davidrich27
closed
3 months ago
0
Update README.md, format shell commands
#79
harryrichman
opened
4 months ago
0
Without isa-l
#78
davidrich27
closed
4 months ago
0
Wd fix protobufs
#77
marybarker
closed
5 months ago
0
Made isa-l optional
#76
ognian-
closed
4 months ago
1
Rf distance fix and tests
#75
davidrich27
closed
4 months ago
0
update merge utility and add trimming as an option
#74
marybarker
closed
7 months ago
0
Add LeafSets directly to the fragment
#73
marybarker
opened
7 months ago
0
RF Distance
#72
davidrich27
closed
7 months ago
0
Partial batch merging
#71
ognian-
closed
8 months ago
0
Uncondense mat nodes in dag loader
#70
marybarker
closed
8 months ago
0
Merge performance
#69
ognian-
closed
8 months ago
0
Viral datasets
#68
ognian-
closed
9 months ago
0
Viral datasets map cgs
#67
marybarker
closed
9 months ago
0
DAG Completion
#66
davidrich27
closed
11 months ago
0
Beast tree loading
#65
marybarker
opened
11 months ago
1
ambiguous DAG IO
#64
marybarker
closed
8 months ago
0
Condense leaves
#63
ognian-
closed
11 months ago
0
Ambiguous VCFs & LoadMATFromProtobuf
#62
davidrich27
closed
11 months ago
1
Benchmark callbacks
#61
marybarker
closed
1 year ago
0
Callback logic refactor
#60
marybarker
closed
1 year ago
0
Reduce fragment storage
#59
ognian-
closed
1 year ago
0
Parallel fragment merging
#58
ognian-
closed
1 year ago
0
fix node mapping for callbacks
#57
marybarker
closed
1 year ago
1
Ambiguous MutationBase
#56
davidrich27
closed
1 year ago
0
cleaned up logic around calculating #new nodes for an SPR move
#55
marybarker
closed
1 year ago
0
Fitch sets
#54
ognian-
closed
1 year ago
0
Fitch sets: setoverlay assert
#53
davidrich27
closed
1 year ago
0
Fitch sets: mutationbase strong type
#52
davidrich27
closed
1 year ago
0
Fitch sets : MutationBase strong typing
#51
davidrich27
closed
1 year ago
0
Fitch sets ua refactor
#50
davidrich27
closed
1 year ago
1
collapsing the DAG
#49
marybarker
opened
1 year ago
2
Fitch sets: test tree after spr
#48
davidrich27
closed
1 year ago
0
merge fragments after reassign_states call
#47
marybarker
closed
11 months ago
1
Node id mapping
#46
ognian-
closed
1 year ago
2
Optimize subtree
#45
ognian-
closed
1 year ago
0
Calculate leaf sequences from Fitch sets
#44
marybarker
closed
11 months ago
7
Merge tree fragments
#43
willdumm
closed
11 months ago
1
Extendable dag
#42
ognian-
closed
1 year ago
2
move score coefficient and optimal weight tree counting
#41
willdumm
closed
1 year ago
1
Benchmarking on very large DAGs
#40
willdumm
opened
1 year ago
0
Subsetting (trimming/sampling) the history DAG efficiently
#39
willdumm
opened
1 year ago
0
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