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mgymrek
/
pybamview
Browser based application for viewing bam alignments
MIT License
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17
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Possible Remote Code Execution Vulnerability
#52
tch1bo
opened
5 years ago
0
I have a problem using pybamview.
#51
kds135
opened
7 years ago
2
Small changes for Python 3 compatibility
#50
bjoernpollex
opened
7 years ago
0
check for both .bai and .bam.bai indices
#49
mgymrek
closed
8 years ago
0
Extremely high coverage loci
#48
mgymrek
opened
8 years ago
0
Replace pyfasta with pyfaidx
#47
mdshw5
closed
8 years ago
3
Extend error thrown when no samples in BAM file
#46
fomightez
closed
8 years ago
1
snapbam: generate alignment views from the command line
#45
mgymrek
closed
8 years ago
0
Look for index as either file.bai or file.bam.bai
#44
mgymrek
closed
8 years ago
2
implementing option to downsample reads
#43
mgymrek
closed
9 years ago
0
Develop
#42
moonso
closed
9 years ago
12
Flask blueprint tweaks
#41
robinandeer
closed
9 years ago
4
paired-end
#40
kspham
opened
9 years ago
1
Use flask blueprint
#39
robinandeer
closed
9 years ago
2
Flask app factory
#38
robinandeer
closed
9 years ago
2
Look into using pyfaidx instead of pyfasta
#37
mgymrek
closed
8 years ago
1
Use entry points
#36
robinandeer
closed
9 years ago
3
On using Flask Blueprints
#35
robinandeer
closed
9 years ago
6
add -100bp, -10bp, +10bp, +100bp nav buttons.
#34
andynu
closed
9 years ago
2
Chromnames
#33
mgymrek
closed
10 years ago
0
add option to only load a single bam file instead of whole directory
#32
mgymrek
closed
10 years ago
0
removing pandas requirement
#31
mgymrek
closed
10 years ago
0
Remove pandas dependency
#30
mgymrek
closed
10 years ago
1
updating default location
#29
mgymrek
closed
10 years ago
0
Read group strings
#28
mgymrek
closed
10 years ago
0
Improve the default region first displayed
#27
laserson
closed
10 years ago
3
Support for Python 2.4+
#26
laserson
closed
10 years ago
3
"." in read groups breaks
#25
mgymrek
closed
10 years ago
2
Add option to use a single specified bam rather than an entire directory
#24
mgymrek
closed
10 years ago
1
Exper
#23
dlrice
closed
10 years ago
3
Version tags for 1.0.4 and 1.0.5
#22
jrandall
closed
10 years ago
1
fixing problem where read group is not a string
#21
mgymrek
closed
10 years ago
0
fixing bug in text too big for zoom out 2x
#20
mgymrek
closed
10 years ago
0
fixing snapshot bug
#19
mgymrek
closed
10 years ago
0
Smallfixes
#18
mgymrek
closed
10 years ago
0
D3
#17
mgymrek
closed
10 years ago
0
Handle fasta files with extra information in chromosome names
#16
mgymrek
closed
10 years ago
1
Fail nicely with invalid BAM headers
#15
mgymrek
closed
10 years ago
1
Load by sample
#14
mgymrek
closed
10 years ago
0
load by sample rather than by bam
#13
mgymrek
closed
10 years ago
1
Export svg
#12
mgymrek
closed
10 years ago
0
Add support for annotating simple variants from an input VCF file
#11
mgymrek
opened
10 years ago
0
make sample headers scroll with alignments
#10
mgymrek
closed
10 years ago
2
Add feature to render output as PDF
#9
mgymrek
closed
10 years ago
1
Target loci
#8
mgymrek
closed
10 years ago
0
ParseCigar for c in cigar: TypeError: 'NoneType' object is not iterable
#7
trickytank
closed
10 years ago
2
Allow multiple same-named read groups across BAMs
#6
ihaque
closed
10 years ago
2
highlight positions not matching the reference
#5
mgymrek
closed
10 years ago
1
add arrows for jumping navigation
#4
mgymrek
closed
9 years ago
1
Handle all CIGAR cases.
#3
mgymrek
closed
10 years ago
3
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