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microbiomedata
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nmdc-aggregator
Scripts that periodically aggregate data related to KEGG search
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Refactor metaproteomics aggregation script
#27
kheal
opened
2 weeks ago
7
Refactor metaP aggregation
#26
kheal
opened
2 weeks ago
1
Modify metagenome_annotation_id to was_generated_by
#25
kheal
closed
1 week ago
2
Update generate_functional_agg.py to use `was_generated_by` field in place of `metagenome_id`
#24
kheal
closed
1 week ago
1
Berkeley: Merge branch `10-...` into `main`
#23
eecavanna
closed
1 month ago
0
Merge `main` into the `10-...` feature branch to improve `VERSION` management
#22
eecavanna
closed
1 month ago
0
Automatically synchronize `VERSION` file with Release tag name
#21
eecavanna
closed
1 month ago
0
Update GHA workflow to synchronize `VERSION` file with release tag
#20
eecavanna
closed
1 month ago
0
Update functional_agg to use workflow_execution_set
#19
mbthornton-lbl
closed
1 month ago
1
DO NOT MERGE `berkeley` metaproteomics aggregation updates PR
#18
aclum
closed
1 month ago
0
8 update generate functional aggpy to also include metatranscriptome annotation set
#17
chienchi
closed
2 months ago
0
Document process of setting up local development environment
#16
eecavanna
closed
2 months ago
0
Refine developer documentation in `README.md`
#15
eecavanna
closed
2 months ago
0
generate aggregation results for COG and Pfam. Add tests
#14
chienchi
closed
2 months ago
0
Update generate_metap_agg.py script to source ids from new slot
#13
kheal
closed
2 weeks ago
1
update generate_functional_agg.py to generate aggregation results for COG and Pfam
#12
aclum
closed
2 months ago
0
update aggregation scripts to use API to submit instead of pymongo
#11
aclum
opened
3 months ago
6
`berkeley`: update generate_metap_agg.py
#10
aclum
closed
1 month ago
10
`berkeley`: update generate_functional_agg.py
#9
aclum
closed
1 month ago
5
update `generate_functional_agg.py` to also include `metatranscriptome_annotation_set`
#8
aclum
closed
2 months ago
10
Disable debug logs
#7
eecavanna
closed
6 months ago
0
Unwrap rows from `kegg_term_counts` dictionary
#6
eecavanna
closed
6 months ago
1
Print the `rows` value to help with debugging
#5
eecavanna
closed
6 months ago
0
Helper function returns `dict` but `insert_many` expects a non-empty `list`
#4
eecavanna
closed
6 months ago
0
Add log statements to help with debugging
#3
eecavanna
closed
6 months ago
0
Add logging to assist in debugging
#2
eecavanna
closed
6 months ago
1
Document deployment process
#1
eecavanna
closed
6 months ago
1