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microbiomedata
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nmdc-schema
National Microbiome Data Collaborative (NMDC) unified data model
https://microbiomedata.github.io/nmdc-schema/
Creative Commons Zero v1.0 Universal
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`Database` class has two slots named `planned_process_set`
#1955
eecavanna
closed
1 month ago
1
`Database` class has two slots named `functional_annotation_agg`
#1954
eecavanna
closed
1 month ago
0
Bump tqdm from 4.66.2 to 4.66.3
#1953
dependabot[bot]
closed
2 months ago
0
Merge `nmdc-schema/main` branch (base) into `berkeley-schema-fy24/main` branch (fork)
#1952
eecavanna
opened
2 months ago
1
Dump local
#1951
turbomam
closed
2 months ago
0
Range for slots in slots table on class documentation pages account ofor `any_of`/`exactly_one_of`
#1950
sujaypatil96
closed
2 months ago
1
Create metabolomics_check_workflow_activity.js
#1949
aclum
closed
1 month ago
0
mixed QC tools and targets
#1948
turbomam
opened
2 months ago
3
Master `Information` class issue
#1947
turbomam
opened
2 months ago
13
NMDC schema slots to NCBI MIxS term matching
#1946
sujaypatil96
closed
1 month ago
5
Ensure that `src/scripts/ncbi_postgres_nmdc_exact_term_matching.py` reads credentials from `local/.env`
#1945
sujaypatil96
closed
2 months ago
0
Ensure consistency of cardinality displayed on edges of Mermaid class diagram
#1944
sujaypatil96
closed
2 months ago
0
Expand `FileTypeEnum` to include "LC-MS Lipidomics Results" with a description of "LC-MS-based lipid assignment results table"
#1943
kheal
closed
2 months ago
0
Update description for `git_url` for `MetabolomicsAnalsysis` to specify that it has to point to an exact workflow (to differentiate lipids, gc_ms metabs (only one right now) and lc_ms metabs
#1942
brynnz22
closed
1 month ago
0
`napa_compliance` branch: Update script to generate request bodies for `/queries:run` endpoint
#1941
eecavanna
closed
2 months ago
1
Create declarative mapping file for NMDC-to-NCBI push
#1940
sujaypatil96
closed
1 month ago
3
`napa_compliance` branch: Update deletion code to generate request bodies for `queries:run` Runtime API endpoint
#1939
eecavanna
closed
2 months ago
1
Factor `TextValue` out of nmdc-schema and migrate accordingly
#1938
turbomam
opened
2 months ago
3
Add slots to Biosample class to disambiguate standard MG metadata vs long-read MG metadata
#1937
pkalita-lbl
opened
2 months ago
3
PR to sync metab_re-id branch with main
#1936
aclum
closed
2 months ago
1
Update pypi-publish.yaml for trusted publishing
#1935
pkalita-lbl
closed
2 months ago
1
Upgrade locked version of bioregistry
#1934
pkalita-lbl
closed
2 months ago
0
metabolomics,nom,lipidomics re-id code
#1933
aclum
opened
2 months ago
0
GitHub Actions workflow is failing due to inability to install `bioregistry`
#1932
eecavanna
closed
2 months ago
1
Move executable Python script from `assets/` to `src/scripts/`
#1931
sujaypatil96
closed
2 months ago
0
Use PyPI trusted publisher settings in release publishing workflow
#1930
pkalita-lbl
closed
2 months ago
0
Migrations: Add example doctests for functions that use adapter methods
#1929
eecavanna
opened
2 months ago
0
Review and test NOM re-IDing code
#1928
mbthornton-lbl
closed
2 months ago
2
Display single/multi-valued (cardinality) on slot edges
#1927
sujaypatil96
closed
2 months ago
0
wrap `s.range` from class diagram jinja in `gen.name()`
#1926
sujaypatil96
closed
2 months ago
1
generate prefixmap for nmdc
#1925
sierra-moxon
opened
2 months ago
2
Update identifiers.md
#1924
aclum
closed
2 months ago
2
1914 metabolite identification
#1923
brynnz22
closed
2 months ago
0
Add sets to `Database` for the `MaterialProcess` subclasses
#1922
anastasiyaprymolenna
closed
2 months ago
5
Bump idna from 3.6 to 3.7
#1921
dependabot[bot]
closed
2 months ago
0
Create `ChromatographicSeparationConfiguration` class and modify existing `ChromatographicSeparation` to accommodate
#1920
kheal
closed
1 month ago
5
Hyperlink class blocks in mermaid class diagram
#1919
sujaypatil96
closed
2 months ago
0
Refactor `has_calibration` to use a class
#1918
brynnz22
closed
2 months ago
5
Refactor `principal_investigator` slot on `Study`
#1917
brynnz22
opened
3 months ago
2
support slot for when document was added
#1916
aclum
closed
2 months ago
12
Bump pymongo from 4.6.2 to 4.6.3
#1915
dependabot[bot]
closed
3 months ago
0
Rename `has_metabolite_quantification` and associated class to `has_metabolite_identification`
#1914
kheal
closed
2 months ago
5
Create `MassSpectrometryConfiguration` class and modify existing `MassSpectrometry` class to accommodate
#1913
brynnz22
closed
1 month ago
0
Add permissible values to `FileTypeEnum` and `DataCategoryEnum` to accomodate workflow configuration `DataObject`s
#1912
brynnz22
closed
2 months ago
3
Add `workflow_version` slot to `WorkflowExecution` classes
#1911
brynnz22
closed
2 months ago
1
Edit slot usages to accommodate multiple detection configurations for single `MassSpectrometry` instance
#1910
brynnz22
closed
2 months ago
0
Expand `StationaryPhaseEnum` to include values needed for GC-MS and LC-MS metab data
#1909
brynnz22
closed
3 months ago
1
Add `StorageProcess` class (a subclass of `MaterialProcessing` with slots like `substances_used` (already exists) and `contained_in` slot (already exists), `duration` (already exists), and `temperature` (already exists). With `input` and 'output`
#1908
brynnz22
closed
2 months ago
4
Add `sample_portion` to `SubsamplingProcess`
#1907
brynnz22
closed
2 months ago
1
Flush out `SubstanceRoleEnum`
#1906
brynnz22
closed
2 months ago
1
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