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microbiomedata
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nmdc-schema
National Microbiome Data Collaborative (NMDC) unified data model
https://microbiomedata.github.io/nmdc-schema/
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Migrations: Update migrators to raise Exception instead of printing error message
#2004
eecavanna
closed
1 month ago
3
Migrations: Update adapter to support callback for when a new collection is being processed
#1997
eecavanna
closed
3 weeks ago
1
Update `FailureWhereEnum` to reflect updated class names
#1996
kheal
closed
1 month ago
8
Add PR template
#1995
kheal
closed
2 days ago
5
Manual addition of `structured_pattern` constraints on class mentioning slots, plus...
#1994
turbomam
closed
1 month ago
4
1992 add alternative identifiers to WorkflowExeuctionActivity
#1993
aclum
closed
1 month ago
0
Add alternative identifiers to WorkflowExeuctionActivity
#1992
aclum
closed
1 month ago
0
Bump requests from 2.31.0 to 2.32.0
#1991
dependabot[bot]
closed
1 month ago
0
Report slots, as used by some class, that have another class in their range, when that range class has a strcutred pattern
#1990
turbomam
closed
1 month ago
5
Updates to syntax for nmdc identifiers
#1989
aclum
closed
1 month ago
0
update to enforce including id_version in WorkflowExecutionActivity subclasses
#1988
aclum
closed
1 week ago
6
Update data qc to allow legacy.js
#1987
aclum
closed
1 month ago
0
Fix instrument migrator to make `instrument_used` multivalued
#1986
brynnz22
closed
1 month ago
0
Restore dump_single_modality version of pure-export
#1985
turbomam
closed
1 month ago
3
Update eluent introduction description
#1984
mslarae13
closed
1 month ago
1
`berkeley-schema-fy24`: Finalize names of Berkeley schema migrators
#1983
eecavanna
closed
4 days ago
6
Fix version specifier for pypa/gh-action-pypi-publish
#1982
pkalita-lbl
closed
1 month ago
0
Do not pin to a specific version of pypa/gh-action-pypi-publish
#1981
pkalita-lbl
closed
1 month ago
0
deduplicate Database slots
#1980
turbomam
closed
1 month ago
0
minimize use of `any_of` r`ange`s, `rules` and `slot_usages`
#1979
turbomam
opened
1 month ago
0
Refine range and class assignment of `was_generated_by`
#1978
turbomam
closed
1 month ago
0
remove `domain` assertions from slot definitions
#1977
turbomam
closed
1 month ago
1
add target for distributing prefix map as well
#1976
sierra-moxon
closed
1 week ago
2
documentation for deprecation methodology and example using `omics_type`
#1975
sierra-moxon
closed
1 month ago
0
2024 nmdc-schema paper?
#1974
turbomam
opened
1 month ago
1
nmdc-schema should not use `string_serialization`
#1973
turbomam
opened
1 month ago
0
`eluent_introduction_category` modeling broken in latest backmerge
#1972
turbomam
closed
1 month ago
5
`src/data/valid/Database-biosample-exhasutive.yaml` requires MIxS `multivalued` slots with class ranges to be `inlined_as_list`
#1971
turbomam
closed
1 month ago
2
`berkeley-schema-fy24`: Migrator `migrator_from_X_to_PR10.py` fails to load YAML file when used via PyPI package
#1970
eecavanna
closed
1 month ago
0
Updating some ID mentions to napa style IDs
#1969
aclum
closed
1 month ago
1
1846 incorrect range for was informed by
#1968
aclum
closed
1 month ago
0
issues with was_generated_by
#1967
aclum
closed
1 month ago
1
Manually curated mappings between NMDC and NCBI Attribute mappings
#1966
sujaypatil96
opened
1 month ago
0
Remove phenol/chloroform extraction from `ExtractionTargetEnum`
#1965
aclum
closed
1 month ago
3
berkeley-schema-fy24: what are the global expectations for usign the `git_url` slot?
#1964
turbomam
opened
1 month ago
0
Update `MetabolomicsAnalysis` `slot_usage` of the `git_url` slot
#1963
brynnz22
closed
1 month ago
0
`berkeley-schema-fy24`: Description of `type` slot may be inaccurate (`id` versus `class_uri`)
#1962
eecavanna
closed
1 month ago
0
Add new values to FileTypeEnum
#1961
JamesTessmer
closed
1 month ago
2
Omit derived files from repo (generate them locally instead)
#1960
eecavanna
opened
1 month ago
0
Bump jinja2 from 3.1.3 to 3.1.4
#1959
dependabot[bot]
closed
1 month ago
0
Expand permissible values on `FileTypeEnum` for Metaproteomics related files
#1958
kheal
closed
1 month ago
1
Class Extraction issues
#1957
aclum
closed
1 month ago
1
local-pure-export-example
#1956
turbomam
closed
2 weeks ago
0
`Database` class has two slots named `planned_process_set`
#1955
eecavanna
closed
1 month ago
1
`Database` class has two slots named `functional_annotation_agg`
#1954
eecavanna
closed
1 month ago
0
Bump tqdm from 4.66.2 to 4.66.3
#1953
dependabot[bot]
closed
1 month ago
0
Merge `nmdc-schema/main` branch (base) into `berkeley-schema-fy24/main` branch (fork)
#1952
eecavanna
opened
2 months ago
1
Dump local
#1951
turbomam
closed
2 months ago
0
Range for slots in slots table on class documentation pages account ofor `any_of`/`exactly_one_of`
#1950
sujaypatil96
closed
1 month ago
1
Create metabolomics_check_workflow_activity.js
#1949
aclum
closed
1 month ago
0
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